PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla009182 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 18645.2 Da PI: 8.4917 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 146.2 | 9e-46 | 17 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+C ++Cv+apyfpa+qp+kfanvhk+FGasnv k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e Cla009182 17 PCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAE 116 7**********************************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.474 | 16 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.1E-45 | 17 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MKTENGRKQG GGTGAAPCAA CKLLRRRCGE ECVFAPYFPA DQPHKFANVH KVFGASNVNK 60 MLQELPIHQR GDAVSSLVYE ANARVRDPVY GCVGAISSLQ QQIDALQTQL ALAQAEVVHL 120 RVRQTAPFSN YGLSPTSPSN SGSPSSRLMG SQSRPMFEMD MVVDQAMGDS MW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-48 | 16 | 118 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-48 | 16 | 118 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681931 | 1e-136 | LN681931.1 Cucumis melo genomic scaffold, anchoredscaffold00049. | |||
GenBank | LN713266 | 1e-136 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004145462.1 | 1e-108 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 6e-72 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A0A0LYG0 | 1e-107 | A0A0A0LYG0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004145462.1 | 1e-107 | (Cucumis sativus) | ||||
STRING | XP_004164216.1 | 1e-107 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 3e-56 | LOB domain-containing protein 4 |