PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009098
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 768aa    MW: 85716.4 Da    PI: 4.5532
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009098genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10610652145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r +W++++ e++++av+q+G++ +  I + ++ gRt+ q+k+++ 
        Cla009098 610 RTKWSKQDTERFYEAVRQFGTD-FCMIQQLFP-GRTRRQIKLKFK 652
                      789*******************.*********.*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.1E-26603673No hitNo description
Gene3DG3DSA:1.10.10.601.3E-7607653IPR009057Homeodomain-like
PROSITE profilePS512939.037608659IPR017884SANT domain
SMARTSM007171.7E-8609657IPR001005SANT/Myb domain
CDDcd001671.54E-7612652No hitNo description
SuperFamilySSF466891.64E-10612659IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MDVDPFDEFF SDPGVTSRAG GRFQPKIKPR PKKQTLAPKS TLSQDKKGTI PDTKSCHDGS  60
GSSKSIKLSS QLPVMEEKGE SEDDLLLATA RSDLIGCSHP TSVESAKMVN STQFDLDSYG  120
STLCSGSTID GGVTDAIDLT TFSSVPVGEN LTDDTKTSGI LNNSHPSVSS AHEATVLDQS  180
GLGSIQSEGG HFNDGKIAGE NIDLFYELEC LDDFHNQPKN EADPSSLKQA SISNEDGDLD  240
KQRFQEYGAG AIITMDTISS GTTTPSERPA CKYIPKPKMR TAEDACTQIS QPEISNMLPL  300
SPQVNSCDTR CMHEASIGTH SDGILNDSSI NFDGYTPDNQ HTETPVNVES LAYDSYGDIL  360
VDDFNSDDQD EMLREESGKN DEEEPSTESN ISQQQKMFSP VGEEIEHSKT SRKLRKKVSH  420
QLDEPEDGVD ENRNSPNEPS SNCDVHGDSY NKNEIPKGVR GKKTSTKSSK PSSDNEKPTR  480
KRKDANKAVP DLQAEKRPKK FSHSTRRNRR QVNKVLLETP EDEIDFQKIS FRDLIIYHEH  540
KEKLEKKVAS TRKSATNQRT DTSGEEIYND GEESLASEQG RGTDDDETPD VVDMTSAYFN  600
YQSFMDKTPR TKWSKQDTER FYEAVRQFGT DFCMIQQLFP GRTRRQIKLK FKSEERHHPF  660
RLSDAITNRS KVKYFADHSQ FLSLIGQLQE AANKAKHESN QDELTENTGD EEQPELSPET  720
NEEEVAKPVG VEETEKEEFV GGEVHSPLKA DDSDDDDPNR WDDYKFDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6eu0_V8e-11599712406526Transcription factor TFIIIB component B''
6f40_W8e-11599712406526Transcription factor TFIIIB component B''
6f41_W8e-11599712406526Transcription factor TFIIIB component B''
6f42_W8e-11599712406526Transcription factor TFIIIB component B''
6f44_W8e-11599712406526Transcription factor TFIIIB component B''
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818951e-125LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132631e-125LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655158.10.0PREDICTED: uncharacterized protein LOC101216268
TrEMBLA0A0A0KPZ20.0A0A0A0KPZ2_CUCSA; Uncharacterized protein
STRINGXP_004149877.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-38MYB_related family protein