PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla008551 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NF-YA | ||||||||
Protein Properties | Length: 341aa MW: 37026.2 Da PI: 7.0628 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.3 | 4.7e-32 | 167 | 223 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQyq+Il+RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+RgsgGrF Cla008551 167 QEPVFVNAKQYQGILRRRQARAKAEVENKL-IKVRKPYLHESRHQHAMRRARGSGGRF 223 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.3E-35 | 165 | 226 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.157 | 166 | 226 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.4E-28 | 168 | 223 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.3E-23 | 169 | 191 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 171 | 191 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.3E-23 | 200 | 223 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MQSKSKSVNH LGSEPPNMQQ TSSYSEPWWR SIGYNHISPP PAGGNVSNST SLECTNGASE 60 SNDGQSMSND DLNEDDDDDT TKDSHASYGQ VQHNCQHAVS AAPTVHGGCI TQPPQLELVG 120 HSIACASNPY QDPYYAGVMA AYGHQPGYPP FLGMPHARMA LPLEVTQEPV FVNAKQYQGI 180 LRRRQARAKA EVENKLIKVR KPYLHESRHQ HAMRRARGSG GRFAKKNEAN SSSSTLKDKD 240 SGSGQAISSH SAGSSGSEAA PCALAETWNS SNGQQEERTQ LHEAYEARSY LNGSSQFHNY 300 SSFQASPYGL RSGERGEDGD CSGQQRSVSE NQAAQRRLAI K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-19 | 166 | 231 | 1 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 1e-177 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 1e-177 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011657641.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
Refseq | XP_011657642.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
Swissprot | Q9LXV5 | 9e-75 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A0A0KEL9 | 0.0 | A0A0A0KEL9_CUCSA; Uncharacterized protein | ||||
STRING | XP_004156306.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4012 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 1e-69 | nuclear factor Y, subunit A1 |
Publications ? help Back to Top | |||
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