PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008173
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 431aa    MW: 49338 Da    PI: 5.3198
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008173genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-18130176148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
        Cla008173 130 KGQWTEEEDRKLIRLVKQHGVRKWAQIAEKLE-GRAGKQCRERWHNHL 176
                      799*****************************.*************97 PP
2Myb_DNA-binding521.7e-16182224145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W++eE+ +lv+++++ G++ W+ Ia+ ++ gRt++ +k++w+
        Cla008173 182 KESWSEEEERILVEVHARVGNR-WAEIAKSIP-GRTENAIKNHWN 224
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.314125180IPR017930Myb domain
SuperFamilySSF466892.7E-30127223IPR009057Homeodomain-like
SMARTSM007172.3E-17129178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-28131183IPR009057Homeodomain-like
PfamPF139212.7E-19133190No hitNo description
CDDcd001674.41E-16133176No hitNo description
SMARTSM007174.6E-16181229IPR001005SANT/Myb domain
PROSITE profilePS5129420.198181231IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-20184229IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MQSNAPPQRP PSGPPLAAID RFLYSHSVNG NCFEKGLIGG FLPESCEGGS GGEWIEIERR  60
RRVEGELEIE EEEEEEEEEE EEEMFGWGRK NNEGNCEMGL KELMIRSNNE VKICSKFKKF  120
KKVSSANLIK GQWTEEEDRK LIRLVKQHGV RKWAQIAEKL EGRAGKQCRE RWHNHLRPDI  180
KKESWSEEEE RILVEVHARV GNRWAEIAKS IPGRTENAIK NHWNATKRRQ NSRRKNKRPN  240
SQNGKPHSSI LQDYIKSKYN PMAAVLTSAV SDDLSSHFNH FISESSDSTS NLSFTIISSP  300
TYDDELLFMQ NFFSNSGEML SLPFVDDGAT MRNQSMVEFA SVDSEQKVER PTIKDDARNV  360
ATSTHLYSDM YLSHLLNGTM NNSYDGGDEI KNMTEMAELQ AAAAGESQWE NPQQGKREMD  420
LMEMLSFHCY S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-4611923047158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-4611923047158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226237KRRQNSRRKNKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457563.10.0PREDICTED: protein ODORANT1
TrEMBLA0A1S3C5S60.0A0A1S3C5S6_CUCME; protein ODORANT1
STRINGXP_008457563.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.16e-73myb domain protein 119