PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla006906 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 296aa MW: 34179.5 Da PI: 6.5159 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 147.5 | 7e-46 | 14 | 144 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevlsk..kg 97 pGfrFhPt+eel+ +yLk+ v gk+ + ++vi ++iy+++PwdLp +k++e+ewyfF++rd+k+ g r+nr+t gyWkatg+d+++ls + Cla006906 14 LPGFRFHPTEEELLEFYLKQMVFGKRRHSFDVIGFLNIYQHDPWDLPDLAKNGEREWYFFVPRDRKHGgcGGGRPNRTTGIGYWKATGSDRRILSLsdPK 113 59************************9999*****************8889999************9955599********************9975556 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +gl+ktLvfykgrap+g+ktdWvm+eyrl Cla006906 114 RFIGLRKTLVFYKGRAPRGTKTDWVMNEYRL 144 67***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-53 | 6 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.201 | 13 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-24 | 15 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MADTGHHHHQ LGQLPGFRFH PTEEELLEFY LKQMVFGKRR HSFDVIGFLN IYQHDPWDLP 60 DLAKNGEREW YFFVPRDRKH GGCGGGRPNR TTGIGYWKAT GSDRRILSLS DPKRFIGLRK 120 TLVFYKGRAP RGTKTDWVMN EYRLPDNSSL PMDMVLCKIY RKATSLKVLE QRAVEEETKN 180 LQMNNTTIAT PLMGEEQDDD QDSICTQNIQ RLNSCEVVMK KETSYGEEEE EVDSKVADGG 240 SSLSSTTSLQ IPKGFNMLTD LQVPKVNMDW TQDQFWNQFN SPWLLNFTTP SNILNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-44 | 10 | 165 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-44 | 10 | 165 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-44 | 10 | 165 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-44 | 10 | 165 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-44 | 10 | 165 | 17 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-44 | 10 | 165 | 17 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-44 | 10 | 165 | 17 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-44 | 10 | 165 | 17 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-44 | 10 | 165 | 17 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-44 | 10 | 165 | 17 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-44 | 10 | 165 | 17 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-44 | 10 | 165 | 17 | 171 | NAC domain-containing protein 19 |
4dul_A | 2e-44 | 10 | 165 | 14 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-44 | 10 | 165 | 14 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681918 | 1e-107 | LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020. | |||
GenBank | LN713265 | 1e-107 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011656937.1 | 1e-179 | PREDICTED: NAC domain-containing protein 67-like | ||||
Swissprot | Q10S65 | 2e-90 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A0A0KAG5 | 1e-178 | A0A0A0KAG5_CUCSA; Uncharacterized protein | ||||
STRING | XP_008448321.1 | 1e-178 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6214 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 1e-97 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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