PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006211
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 192aa    MW: 20375.3 Da    PI: 7.1832
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006211genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.9e-161865355
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++G+r  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Cla006211 18 FRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALSLKG 65
               79995..678*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.5591773IPR001471AP2/ERF domain
SMARTSM003804.5E-281779IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-181875IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-261875IPR001471AP2/ERF domain
CDDcd000181.09E-171875No hitNo description
PRINTSPR003672.2E-61829IPR001471AP2/ERF domain
PfamPF008472.3E-91965IPR001471AP2/ERF domain
PRINTSPR003672.2E-65575IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSDNNNNSPG RPGRHHLFRG IRSRSGKWVS EIREPRKTTR IWLGTYPTPE MAAAAYDVAA  60
LSLKGPHASL NFPDSRNSYR IPLSTSASDI RAAAAIAAAS RNLNNNNPGQ ASPSAATAAD  120
SSHTDGGGPS SHATADSSGK FVDEEELLNM PNLLVDMAEG MLVSPPRMKS PSSDDSPTHS  180
SQGDDGLWSY SK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1315771276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818483e-60LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132603e-60LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140856.12e-81PREDICTED: ethylene-responsive transcription factor ERF025
SwissprotQ9FJ902e-48ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0A0L6E04e-80A0A0A0L6E0_CUCSA; Uncharacterized protein
STRINGXP_004140856.17e-81(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-38ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]