PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006058
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 632aa    MW: 69830.7 Da    PI: 6.7617
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006058genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.82.9e-064444791454
                HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                d +N++f  Lr+++P a     +K++  +iL ++veY+ +L
  Cla006058 444 DSLNDKFIILRSVVPFA-----TKMDNTSILGETVEYLEQL 479
                579**************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.3E-494182IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508888.918430479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-10444496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-9444498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-6444484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MEGMLQFAVQ SVEWTYSLFW RFSTQQRMLV WGDGFYNGPI KTTKTLHPAA ATQQHHQHST  60
SLSLHRTHQL TDLYNSLSAA DTLRRPTSAA LSPEDLTESE WFYLLCLSFS FPPGIGLPGK  120
AYSKNKHVWI TGANEIDSKI FSRAILAKTV VCIPVMDGVV ELGTTDKVKQ DIGFIQHIKS  180
IFLQTQRQWE PQKPALSELS TSNSATSLEH YYYKHLYCST NSGNRKELEL EDDMVTNSST  240
SNSSNSNAGG GGGCPCWPST VATTVTAGEP SELIMQLEPS EDIRLGSPDD ASNNFLPNLS  300
HSHSPPPDLH TNFEHPPCNT NATTHLQPPA LGYSSAAVAV ITEDQDTHYC NMLSAILNLN  360
QNHQSSRLLD SSAVSSITCS TQSAFSKWTC RSDDLYHVPT GTASMSQCLL KSILHTIPFL  420
HTKHHRDHNP SKSCDGQCQN AGPDSLNDKF IILRSVVPFA TKMDNTSILG ETVEYLEQLR  480
QKIQDLEAQN REFQSSRRTS FQELHRNAAA PRTCRDKRKL RILEGVGDGC TRPKVLKSPS  540
PITSLDTNLQ VSIIGSDGLL ELQCPYKEGL LLDILLILHG LRIETTAVRS SVSNGLFIAE  600
LHAKVKENTD GKKASILEVK SAIQQIIPCV DT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5t0f_A1e-171417024180Transcription factor MYC3
5t0q_A1e-171417024180Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1514520RDKRKLR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818421e-173LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132591e-173LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657519.10.0PREDICTED: basic helix-loop-helix protein A isoform X2
TrEMBLA0A1S3BM280.0A0A1S3BM28_CUCME; basic helix-loop-helix protein A isoform X2
STRINGXP_008449448.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.15e-65bHLH family protein