PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005633
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 265aa    MW: 28896.2 Da    PI: 7.3847
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005633genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0014527123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               +kC  C++sF +   L  H++ H
  Cla005633  5 HKCRLCSRSFANGRALGGHMKAH 27
               79******************998 PP
2zf-C2H215.45.2e-05159181123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C ksF+++  L  H +++
  Cla005633 159 FRCGKCWKSFRSNRALFGHRKVC 181
                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.14E-5228No hitNo description
PfamPF139121.2E-6428IPR007087Zinc finger, C2H2
SMARTSM003550.071527IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66527IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-7157226No hitNo description
SMARTSM0035540159179IPR015880Zinc finger, C2H2-like
PfamPF139120.057159179IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64159188IPR007087Zinc finger, C2H2
PROSITE profilePS501579.702204226IPR007087Zinc finger, C2H2
SMARTSM003550.056204226IPR015880Zinc finger, C2H2-like
PfamPF139123.9E-11204228IPR007087Zinc finger, C2H2
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEERHKCRLC SRSFANGRAL GGHMKAHLAT FAIEDENLNK TFKSPDPEML SVNGSISIVQ  60
DRESETESKN PTRRRSKRTR RFNTESLPSP SPSPSPEPAS SISDTSPEED VAICLVMLSM  120
EKPSSSNGGI GKGKDQSRTP ESEKSTAAAA AAVGVGKSFR CGKCWKSFRS NRALFGHRKV  180
CRKEGEEEDE EEEDGINGGN WKIFKCPYCC KVFGSGQALG GHKRSHLQGS IRTAIDGNSS  240
KLEIGLDLNL PAPLEEDDYS VVSDV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818601e-139LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132601e-139LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449167.11e-127PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A1S3BKU01e-125A0A1S3BKU0_CUCME; zinc finger protein ZAT4-like
STRINGXP_008449167.11e-126(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-30C2H2-like zinc finger protein