PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla005507 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | LBD | ||||||||
Protein Properties | Length: 156aa MW: 16830.3 Da PI: 8.0476 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 146 | 1e-45 | 17 | 117 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+dCv+apyfp++qp+kf vhk+FGasnv+kll++lpe++r+da+ss+vyeA+ar+rdPvyG+vg+i+ lq++++ l+++la+++++ Cla005507 17 PCAACKLLRRRCAPDCVFAPYFPSDQPHKFSSVHKVFGASNVSKLLQELPEHQRSDAVSSMVYEANARIRDPVYGCVGTISCLQREVDALQQQLAMTQAQ 116 7***********************************************************************************************9988 PP DUF260 101 l 101 l Cla005507 117 L 117 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.04 | 16 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.1E-45 | 17 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MAASEMMMKK GGSGPPPCAA CKLLRRRCAP DCVFAPYFPS DQPHKFSSVH KVFGASNVSK 60 LLQELPEHQR SDAVSSMVYE ANARIRDPVY GCVGTISCLQ REVDALQQQL AMTQAQLVQL 120 KMGQFASTSQ ASSSTDDLLP PPPNINVGAS PSLWSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-50 | 17 | 131 | 11 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-50 | 17 | 131 | 11 | 125 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681800 | 1e-86 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
GenBank | LN713255 | 1e-86 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022930643.1 | 1e-79 | LOB domain-containing protein 4-like | ||||
Swissprot | Q8LBW3 | 4e-56 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0A0K5P4 | 6e-76 | A0A0A0K5P4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004139827.1 | 9e-77 | (Cucumis sativus) | ||||
STRING | XP_004169335.1 | 9e-77 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 6e-52 | LBD family protein |
Publications ? help Back to Top | |||
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