PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla005053

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 202aa MW: 22001.1 Da PI: 6.4888

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla005053	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.5	4.6e-43	38	137	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lp+++r da+sslvyeA ar+rdPvyG++g i +lq+q+++l+aela++++e Cla005053 38 PCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAE 137 7***********************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.757	37	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-42	38	135	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MESSEPKSSP TSTNLLSQSS PSSPSPPPSV QAAVVVSPCA ACKILRRRCA EKCVLAPYFP 60 PSDPLKFTIA HRVFGASNII KLLQDLPDSQ RADAVSSLVY EASARIRDPV YGCAGAICQL 120 QKQINELQAE LAKTQAELVN IHCHQANLVA LICKELAQTP PPMSPLPDHR SLDNNFNIAT 180 PQSYQGYTSL FEDSNIWDPL WT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-43	37	145	10	118	LOB family transfactor Ramosa2.1
5ly0_B	5e-43	37	145	10	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681928	1e-152	LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBank	LN713266	1e-152	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008463550.1	1e-128	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	3e-67	LBD1_ARATH; LOB domain-containing protein 1
Swissprot	Q9SK08	6e-67	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A1S3CK12	1e-126	A0A1S3CK12_CUCME; LOB domain-containing protein 1-like
STRING	XP_008463550.1	1e-127	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-65	LOB domain-containing protein 1