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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cla004791 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
| Family |
RAV |
| Protein Properties |
Length: 360aa MW: 41508.5 Da PI: 7.8893 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cla004791 | genome | ICuGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 35.5 | 2.6e-11 | 52 | 99 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
++kGV ++grW A+I+ + +r++lg+f t+++Aa a++ a+ kl+
Cla004791 52 KFKGVV-PQQNGRWGAQIYA------NhQRIWLGTFKTEKDAAMAYDSAAIKLRT 99
789996.6679******999......44**********99************996 PP
|
| 2 | B3 | 94.7 | 6.2e-30 | 176 | 266 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
f+k+ltpsdv+k++rlv+pkk+a +h +++ +++++++d+s ++W+++++y+++s+++v+t+GW++Fvk+++Lk++D+++F+
Cla004791 176 FQKELTPSDVGKLNRLVIPKKYAVKHfpyisesAEENGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYT 266
99****************************98855556899************************************************93 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MEDEASSSFL SHIKTPILTD EVSDSNFTYY AIPEAKRPRL DNDLNDVVAV GKFKGVVPQQ 60
NGRWGAQIYA NHQRIWLGTF KTEKDAAMAY DSAAIKLRTR DSHRNFPWTR RTIEEPNFQI 120
KFSTDAVLSM IKDGSYYSKF SAYLRTRSQI HDSNLQNPQN FDNTDGDSLF SCSHLFQKEL 180
TPSDVGKLNR LVIPKKYAVK HFPYISESAE ENGDDIEIVF YDTSMKTWKF RYCYWRSSQS 240
FVFTRGWNRF VKEKKLKAND IITFYTYESC GRDENGGTLN FIDVIYKKSE DDQSDSSCLA 300
AEKESVKNEQ ILESELGQNQ GKGCEKEKNK KKKEILSIEL NPNDKNVGGK RIRLFGVHID
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
