PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003897
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARR-B
Protein Properties Length: 606aa    MW: 68765.6 Da    PI: 6.4034
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003897genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like431e-13262310255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 r++W+ e  ++F +a+++L     A Pk il++m+ ++Ltl +v+ HLQkY+ 
  Cla003897 262 SRVVWNAERRRKFTDALNKL-----ARPKLILKMMNEPCLTLRQVANHLQKYKA 310
                79******************.....***************************85 PP
2Response_reg55.43.5e-19211261107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   +l+vd +p+ ++ l+++le++ y +v++++ ++ al +++ek   +Dl++  ++mp+md + +l  + + +  + +i++++  + + a++al  Ga 
     Cla003897  21 ILLVDHDPFSLKHLASLLEQQSY-NVTTTQLASTALSMIQEKGdrFDLVMANVSMPDMDSFSFLHVLLKMN--IAVIFMSSGMNLSVATKALAEGAC 114
                   89*********************.***************999889**********************8865..************************ PP

                   EEEESS--HHHH CS
  Response_reg  96 dflsKpfdpeel 107
                    fl Kp+++++l
     Cla003897 115 YFLQKPISKDDL 126
                   *********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-2517152No hitNo description
SuperFamilySSF521724.13E-2417143IPR011006CheY-like superfamily
SMARTSM004485.5E-1519130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.71120134IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.7E-1621127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.10E-1822133No hitNo description
Gene3DG3DSA:1.10.10.604.8E-13259313IPR009057Homeodomain-like
SuperFamilySSF466891.47E-8260311IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-10262310IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MEEMGYWVTD SLPSFAKNLH ILLVDHDPFS LKHLASLLEQ QSYNVTTTQL ASTALSMIQE  60
KGDRFDLVMA NVSMPDMDSF SFLHVLLKMN IAVIFMSSGM NLSVATKALA EGACYFLQKP  120
ISKDDLKYVW QHVYRWNRNI TKQTQKAKCM EKAKPRKESV GIQIADAVVL SRSGAAVSYN  180
NNCCINYKPM NYKETEKSKQ IVSHDSLAGS YFGGKRLTDD IEGINREKRV KYYSEPTKFG  240
FSRIDEDRER RKEYYIASDS RSRVVWNAER RRKFTDALNK LARPKLILKM MNEPCLTLRQ  300
VANHLQKYKA QVECIKRRRE NKLPNRREAS KCDFSVRTQL PPLLQQHHET SRFSNVGLTS  360
GLGGERFQLI APKSQHSPRL PVSDFVNCDL KMLHHNFQHV SSNYDSVSYD INKEVGICPD  420
NIQTFQKVGS AFPTDNCGKF ALIGGGVQTS ELNFSNVSKM TSEVASSVFD ETQFPNNLLD  480
GVIHQLDLTA FKIENQEALE CSGTSEETQS MSRDIAILDS INLDNVVEVG QELPAASESQ  540
GSQQLAEYAY LLDVLEDDPY DFVGDLNLSD VDKYSEWLRN TVLENRNGPD SFITDNAENF  600
PVEDTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268273ERRRKF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008467175.10.0PREDICTED: uncharacterized protein LOC103504590 isoform X2
TrEMBLA0A1S3CSW90.0A0A1S3CSW9_CUCME; uncharacterized protein LOC103504590 isoform X2
STRINGXP_008467174.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144041618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.13e-38pseudo-response regulator 6