PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla003821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | bHLH | ||||||||
Protein Properties | Length: 179aa MW: 19637.1 Da PI: 9.8793 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.6 | 1.7e-06 | 67 | 105 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Cla003821 67 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 105 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.576 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.58E-8 | 66 | 110 | No hit | No description |
SuperFamily | SSF47459 | 2.75E-12 | 66 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0037 | 67 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-10 | 70 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MKDVRPSYFP ASYNTAAGFA DKSKNISEVG DSVTTVGKKS GNDHNQQSAA AKRPRNETPS 60 PLPAFKVRKE KMGDRITALQ QLVSPFGKTD TASVLSEAIE YIKFLHEQVS VLSTPYLKSG 120 AAVQQQHQQQ RCEKSKEGEG GKQDLRSRGL CLVPVSSTFP VTHETTVDFW TPTFGGTFR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN682553 | 1e-59 | LN682553.1 Cucumis melo genomic scaffold, unanchored_scaffold00714. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011650539.1 | 1e-108 | PREDICTED: transcription factor bHLH123 isoform X2 | ||||
Swissprot | Q8GXT3 | 9e-68 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A0A0L564 | 1e-107 | A0A0A0L564_CUCSA; Uncharacterized protein | ||||
STRING | XP_004151277.1 | 1e-107 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 3e-68 | bHLH family protein |
Publications ? help Back to Top | |||
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