PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla001480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | Trihelix | ||||||||
Protein Properties | Length: 355aa MW: 38672.4 Da PI: 5.2143 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 86.9 | 2.3e-27 | 41 | 135 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li++++ e+r+r g+ + +p+W++vs+++r++g++r+p+qC+++w+nl++++kkike+e++ +++++s +++ ++l+ Cla001480 41 RWTRQEILVLIQGKKVAETRVRGGRaaslafgsgQVEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIREDTESFWVMRNDLR 135 8*********************875566777777**********************************************999999999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-5 | 41 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.4 | 41 | 107 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.0E-11 | 41 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MALQQLSLGP TPVDGVTNGV DVRPMSTDGG DDGSKTPRLP RWTRQEILVL IQGKKVAETR 60 VRGGRAASLA FGSGQVEPKW ASVSSYCRRH GVNRGPVQCR KRWSNLAGDF KKIKEWESQI 120 REDTESFWVM RNDLRRERKL PGFFDREVYD ILDSGSGPSP SPALALALTP VPLPAPPVAL 180 NSDDAKPDVE PEPVFDSSKT AAADDGLFSD FEQDETSRSP LKEVAGKEVP APTADGAIPA 240 PTPLSEKLYQ PAGQECPHQG TTNEKEAAAN PEIGSTSSQE GRKRKRVALD GDEETILQDE 300 LIGILEKNGK LLTAQLEAQN MNFQLDREQR KHHADGLVAV LNKLADALGR IADKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681925 | 0.0 | LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140557.1 | 0.0 | PREDICTED: uncharacterized protein LOC101222632 isoform X1 | ||||
Swissprot | Q8VZ20 | 1e-123 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A0A0KDF5 | 0.0 | A0A0A0KDF5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004140557.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2165 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-121 | Trihelix family protein |
Publications ? help Back to Top | |||
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