PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla000893
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HD-ZIP
Protein Properties Length: 837aa    MW: 92308.8 Da    PI: 6.4326
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla000893genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181775357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Cla000893 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
               5679*****************************************************97 PP
2START181.16.2e-571613692205
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++++++l+v+ ++  g+++l +++l+
  Cla000893 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDQPSWFRDCRAVDVLNVLPTAngGTIELLYMQLY 259
                789*******************************************************.9999999999****************9999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l+p Rdf+ +Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s+++ ++k+
  Cla000893 260 APTTLAPaRDFWLLRYTSVLEDGSLVICERSLKNTQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKM 359
                **************************************9998899******************************************************* PP

                HHHHTXXXXX CS
      START 196 wvatlqrqce 205
                ++a+l+++++
  Cla000893 360 TMAALRQLRQ 369
                ******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5161276IPR001356Homeobox domain
SMARTSM003891.2E-151480IPR001356Homeobox domain
SuperFamilySSF466894.28E-171680IPR009057Homeodomain-like
CDDcd000869.29E-171777No hitNo description
PfamPF000462.9E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-181975IPR009057Homeodomain-like
CDDcd146861.14E-669108No hitNo description
PROSITE profilePS5084825.51151379IPR002913START domain
CDDcd088756.28E-79155371No hitNo description
SuperFamilySSF559616.04E-38160371No hitNo description
Gene3DG3DSA:3.30.530.202.2E-23160367IPR023393START-like domain
SMARTSM002347.6E-43160370IPR002913START domain
PfamPF018522.5E-54161369IPR002913START domain
PfamPF086705.6E-52694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MAMSCKDGNK HGIDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQH  120
TQSTTLGAKD TSCEPVVTSG QHNLTSQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCPGVAARAC GLVGLEPTRV AEILKDQPSW FRDCRAVDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTSVLE DGSLVICERS LKNTQNGPTM  300
PPVQHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPWS VPEVLRPLYE SSTVLAQKMT  360
MAALRQLRQI AHEVSQSNVT GWGRRPAALR SLGQRLTRGF NEALNGFNDE GWSVMGNDGM  420
DDVTILVNSS PDKLMGLNIS FANGFSAISN AVLCARASML LQNVPPAILL RFLREHRSEW  480
ADNNIDAYSA AAVKVGPWSL PGSRVGSFGN QVILPLAHTI EHEEFLEVIK LEGISHTPED  540
AMMPREMFLL QLCSGMDENA IGTCAELIFA PIDASFADDA PLLPSGFRII PLDSGKEASS  600
PNRTLDLASA LEIGPAGNRA PNDSVNSGCS RSVMTIAFEF AFESHMQEHV ASMARQYVRS  660
IISSVQRVAL ALSPSHLSSH AGLRSPLGTP EAQTLARWIC NSYRCYLGVE LLKSGNEGGE  720
LVLKTLWHHS DAIMCCSLKA LPVFTFANQA GLDMLETTLV ALQDITLEKI FDDHGKKMLC  780
SEFPQIMQQG FACLQGGICL SSMGRPVSYE RAVAWKVLND EENAHCICFM FVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141659.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15 isoform X2
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A0A0K7A80.0A0A0A0K7A8_CUCSA; Uncharacterized protein
STRINGXP_004141659.10.0(Cucumis sativus)
STRINGXP_004155954.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]