PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10033388m

Common Name

CICLE_v10033388mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 340aa MW: 39099 Da PI: 8.1607

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10033388m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.4	4.9e-31	175	229	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt+ LH+rFve+ve LGG+ekAtPk il+lm+++gLt+ hvkSHLQkYR+ Ciclev10033388m 175 KTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRT 229 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.2E-17	173	229	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-27	173	230	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-23	175	229	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-5	179	228	IPR001005	SANT/Myb domain
Pfam	PF14379	5.6E-18	262	308	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MKTEKRKVLE QRYSYRSSQE QLPCKVGLSF HSQLPNVEGE GSFKLNPGSC NASGFICSSN 60 FAMPNSVFYA AENCMDFSQD LDNFDLQSSV KVHLQYNQNP SLPKKQPHQD AYRNSPASVF 120 SFMQDPAEEE ASLNERQKCV SFSEYQKHQI LKPSSYHVQT HHEKQAPNTM TSHSKTRIRW 180 TQHLHNRFVE CVEFLGGAEK ATPKGILKLM DIDGLTIFHV KSHLQKYRTA RHIPEGKSKR 240 ERTTDLNAIV RLDSESFINR GMQLVETLKL QLDVQKRLHD QLEVQRNLQL QIEEQGKQLT 300 QMLDQQLKPN KSLVDSNNVD IELQDNQPND LKDTRPFNI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-23	175	232	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-23	175	232	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-23	175	232	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-23	175	232	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-23	175	232	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-23	175	232	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-23	175	232	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-23	175	232	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006439038.1	0.0	myb family transcription factor PHL5
TrEMBL	V4SWJ9	0.0	V4SWJ9_9ROSI; Uncharacterized protein
STRING	XP_006439038.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5476	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-53	G2-like family protein

Link Out ? help Back to Top
Phytozome	Ciclev10033388m
Entrez Gene	18044101