PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10032772m | ||||||||
Common Name | CICLE_v10032772mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 22331.5 Da PI: 7.1948 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.5 | 1.5e-40 | 43 | 142 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk lrr+C ++Cvlapyfp ++p++f +vh++FGasn++k l+ lpe +r+da+ss+vyeA+ar+r+Pv+G++g i++lq+q+ +l+ael Ciclev10032772m 43 PCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAEL 136 7********************************************************************************************* PP DUF260 95 allkee 100 a++++e Ciclev10032772m 137 AKAQAE 142 *99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.558 | 42 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-40 | 43 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MHTTFPPLSS SPSPSFQSSP SINASPSKSS PNLAAPPPIV LSPCAACKSL RRRCDEKCVL 60 APYFPPTEPQ NFIIVHRVFG ASNIIKCLQG LPECQRSDAV SSMVYEANAR IRNPVHGCAG 120 AISQLQKQVI KLQAELAKAQ AETVSMQCQR DNLVALICKE MTTQFPQETM NRVLPQQQFN 180 DDDATTCYLD DKDFASTWDA LWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-40 | 38 | 148 | 6 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-40 | 38 | 148 | 6 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436216.2 | 1e-150 | LOB domain-containing protein 1 | ||||
Refseq | XP_015388139.1 | 1e-150 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 9e-63 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A067DNZ2 | 1e-148 | A0A067DNZ2_CITSI; Uncharacterized protein | ||||
TrEMBL | V4TI95 | 1e-148 | V4TI95_9ROSI; Uncharacterized protein | ||||
STRING | XP_006486488.1 | 1e-149 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 9e-65 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10032772m |
Entrez Gene | 18044145 |