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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Ciclev10032056m |
Common Name | CICLE_v10031666mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
C3H |
Protein Properties |
Length: 335aa MW: 37463.6 Da PI: 8.2048 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10032056m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 19 | 2.4e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k++lC+ffa G C G+ C F+H+
Ciclev10032056m 3 KRVLCKFFAH-GACLKGEHCEFSHD 26
99****6666.*************5 PP
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2 | zf-CCCH | 19.8 | 1.4e-06 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C ++++ G+C+y +rC++ H+
Ciclev10032056m 34 ICTYYQK-GFCSYASRCRYEHV 54
7******.***********997 PP
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3 | zf-CCCH | 19.7 | 1.6e-06 | 131 | 153 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+++C+ fa+ G C++G++C+ +Hg
Ciclev10032056m 131 RSICS-FAAAGNCPRGEKCPHIHG 153
67899.**************9998 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 14.671 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.474 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0031 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.178 | 128 | 155 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0021 | 129 | 154 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-4 | 133 | 154 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.38E-13 | 186 | 261 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 8.8E-10 | 192 | 256 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 0.00878 | 196 | 256 | No hit | No description |
Pfam | PF00097 | 3.3E-7 | 197 | 254 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.238 | 197 | 255 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 3.2E-7 | 197 | 254 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 221 | 230 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 10.643 | 284 | 314 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 16 | 284 | 312 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GFCSYASRCR YEHVKPSRSE 60 LAASSSSSVS HPSRATSSGI TKVPGVMPEL SALSRPFLPP NKTAWNPESV CNDSLENDEV 120 DEPRNLKPAD RSICSFAAAG NCPRGEKCPH IHGDTCPTCG KQCLHPFRPE EREEHMKSCE 180 KKQKHLEALR RSQEIECSVC LDRVLSKPTA AERKFGLLSE CDHPFCISCI RNWRSSSPTS 240 GMDVNTALRA CPICRKLSYF VIPSVIWYYT PEEKQEIIDS YKSKLKSIDC KHFNFGNGNC 300 PFGTSCFYKA TSTQATSIQA TSIKIQCCGY GFIY*
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