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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Ciclev10031965m |
| Common Name | CICLE_v10031666mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
C3H |
| Protein Properties |
Length: 351aa MW: 39473.9 Da PI: 8.0316 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10031965m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 19 | 2.6e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k++lC+ffa G C G+ C F+H+
Ciclev10031965m 3 KRVLCKFFAH-GACLKGEHCEFSHD 26
99****6666.*************5 PP
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| 2 | zf-CCCH | 19.7 | 1.5e-06 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C ++++ G+C+y +rC++ H+
Ciclev10031965m 34 ICTYYQK-GFCSYASRCRYEHV 54
7******.***********997 PP
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| 3 | zf-CCCH | 19.6 | 1.6e-06 | 131 | 153 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+++C+ fa+ G C++G++C+ +Hg
Ciclev10031965m 131 RSICS-FAAAGNCPRGEKCPHIHG 153
67899.**************9998 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 14.671 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.4E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.66E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.1E-4 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.474 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0031 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.0E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.178 | 128 | 155 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0021 | 129 | 154 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.8E-4 | 133 | 154 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 1.97E-13 | 186 | 261 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 9.5E-10 | 192 | 256 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| CDD | cd00162 | 0.00299 | 196 | 256 | No hit | No description |
| PROSITE profile | PS50089 | 12.238 | 197 | 255 | IPR001841 | Zinc finger, RING-type |
| SMART | SM00184 | 3.2E-7 | 197 | 254 | IPR001841 | Zinc finger, RING-type |
| Pfam | PF00097 | 4.1E-7 | 197 | 254 | IPR018957 | Zinc finger, C3HC4 RING-type |
| PROSITE pattern | PS00518 | 0 | 221 | 230 | IPR017907 | Zinc finger, RING-type, conserved site |
| SMART | SM00356 | 0.21 | 284 | 312 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.061 | 284 | 313 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GFCSYASRCR YEHVKPSRSE 60
LAASSSSSVS HPSRATSSGI TKVPGVMPEL SALSRPFLPP NKTAWNPESV CNDSLENDEV 120
DEPRNLKPAD RSICSFAAAG NCPRGEKCPH IHGDTCPTCG KQCLHPFRPE EREEHMKSCE 180
KKQKHLEALR RSQEIECSVC LDRVLSKPTA AERKFGLLSE CDHPFCISCI RNWRSSSPTS 240
GMDVNTALRA CPICRKLSYF VIPSVIWYYT PEEKQEIIDS YKSKLKSIDC KHFNFGNGNC 300
PFGTSCFYKH AYTDGRLEEV VLRHLGSDDG STVIAKDIRL SEFLTNMHIR *
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