PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10031963m | ||||||||
Common Name | CICLE_v10031963mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 351aa MW: 39459.6 Da PI: 7.2367 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65 | 7.9e-21 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk Ciclev10031963m 10 KLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53 6799**************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.3E-28 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.563 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-24 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.92E-24 | 2 | 82 | No hit | No description |
PRINTS | PR00404 | 2.9E-16 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-18 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-16 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-16 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 351 aa Download sequence Send to blast |
MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCNGK 60 RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNVQEFLGTS SQTIEDLTNQ 120 ARLLQSQLSE MHRRLRYWTN PDKINSVEHL GQMENSLRDS LNHLRMHKEN LGKQELMSLE 180 CTTQFQNGIC IPFRMGSEEQ LQTLSWIPNN DNRHMVLPED PNLLSHRDVE CSGSSSFGSY 240 SGYFGPGKSS EISNSGQDSS LLSELSGTQS LRLQLGGQCS YIPYNVSLLN DKFQPVSEMN 300 IQENPVDYHV SGSLEVPRPG FDTTPGSWAS TSGPCEVTLF DERLYSQQLN * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-12 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 1e-12 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 1e-12 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 1e-12 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006438714.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X2 | ||||
Refseq | XP_024041454.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Swissprot | Q1PFA4 | 1e-121 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A067GTB4 | 0.0 | A0A067GTB4_CITSI; Uncharacterized protein | ||||
TrEMBL | V4VH98 | 0.0 | V4VH98_9ROSI; Uncharacterized protein | ||||
STRING | XP_006483134.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006438714.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8754 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03060.2 | 1e-96 | AGAMOUS-like 30 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10031963m |
Entrez Gene | 18045201 |
Publications ? help Back to Top | |||
---|---|---|---|
|