PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031900m
Common NameCICLE_v10031900mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 365aa    MW: 40651.6 Da    PI: 6.9346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031900mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.3e-14175221354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Ciclev10031900m 175 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 221
                      79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-12175221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-15176230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14176228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.89E-5185224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MCGLKEDDQG QCSQTIHNLQ SYQEQLFLHH QQQQQQQQMH QQQLQHHHHH QQQQQRGGLI  60
IPEVSPILPW SLTQVHSFNP AHFGPNPVRE HDPFVLPPPP PPPPTTSYGS LINRSRAPAL  120
QFAYDGSSTH DHLRIISDTL GPMVQPGSAP FGLQAELNKM TAQEIMDAKA LAASKSHSEA  180
ERRRRERINN HLAKLRSLLP STTKTDKASL LAEVIQHVKE LKRQTSLIAE TSPVPTEMDE  240
LTVDASDEDG KFVIKASLCC EDRSDLLPDL IKSLKALRLR TLKAEITTLG GRAKNVLFIT  300
ADDQDSSCSS ATGEQHQQQQ QQYSISSIEE ALKAVMEKTS GDESSSGSVK RQRTNINNLE  360
HRSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180185ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437741.10.0transcription factor bHLH30
SwissprotQ9S7Y11e-108BH030_ARATH; Transcription factor bHLH30
TrEMBLV4TMB90.0V4TMB9_9ROSI; Uncharacterized protein
STRINGXP_006437741.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-101bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]