PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030084m
Common NameCICLE_v10030084mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 355aa    MW: 40192.8 Da    PI: 5.0034
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030084mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-1639128198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +++s+v+   +l l++kf++++  + +++++++ledesg +++ k+ ++k +    l++GW++F  a++L egD +vF+l+  s+f  +v
  Ciclev10030084m  39 FIKFMLRSHVTGGFWLGLSRKFCTDNL-P-KQDTMIVLEDESGSEYDTKYLVEKIG----LSAGWRGFSIAHKLVEGDALVFHLVTPSKF--KV 124
                      89*********************9995.3.37789***************555555....***********************9987888..88 PP

                      EEE- CS
               B3  95 kvfr 98 
                       ++r
  Ciclev10030084m 125 YIVR 128
                      7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-2232129IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-1932130IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-2437128No hitNo description
PfamPF023621.6E-1439128IPR003340B3 DNA binding domain
SMARTSM010196.3E-2139130IPR003340B3 DNA binding domain
PROSITE profilePS5086312.66139130IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
EKRKRSTYDN LYDNEEVKNA VMKQANDIQA NLDPQFPSFI KFMLRSHVTG GFWLGLSRKF  60
CTDNLPKQDT MIVLEDESGS EYDTKYLVEK IGLSAGWRGF SIAHKLVEGD ALVFHLVTPS  120
KFKVYIVRSR GSDEVDCALG LLKLETCNQQ VESEQSEDES KDLGSEVLNG LKFCESVVDF  180
KEVKSFQDFS IVVNDLVIDS ALSKYLRTKY YELCCSQNSF LHNSVLDGLN CKLISGMISE  240
TINITDAIRA SKLTTPHDNF DTWDKTLKAF KMMGMNVGFL LIRLDQLMNL ASTSKRLQEA  300
RLERANAKEE KSALELKLSE VRERIDRLDS EIEALGANPN NLDVMFQEMA KAPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024035069.10.0B3 domain-containing protein Os01g0234100 isoform X1
RefseqXP_024035070.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLV4S7790.0V4S779_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006423042.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16718911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.17e-40B3 family protein