PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029525m
Common NameCICLE_v10029525mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YB
Protein Properties Length: 144aa    MW: 16240.4 Da    PI: 6.7774
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029525mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB46.31e-1411104694
            NF-YB   6 rflPianvsrimkkvlPa...na..kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      ++lP + v r++k  l +   ++   + kda     e +  fi ++++ a+d c++ kr+tin++d+l a+ ++ f ++v+pl+  l ++r+ +
  Ciclev10029525m  11 EELPKTIVRRVVKDKLHNcspDTdiSVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKN 104
                      56888889999998875422233114567888888888999**************************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-324140IPR009072Histone-fold
PfamPF008084.3E-101281IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.08E-2513119IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
METEKVVPEA EELPKTIVRR VVKDKLHNCS PDTDISVHKD ALLAFCESAR IFIHYLSATA  60
NDICKESKRQ TINAEDVLKA IEEIDFTEFV DPLRDSLDEF RQKNAGKRAG TSKSKEEKKK  120
QKVEGEASKK SCGKTEKDKK NEE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424230.12e-99DNA polymerase epsilon subunit 3
TrEMBLV4SF434e-98V4SF43_9ROSI; Uncharacterized protein
STRINGXP_006424230.16e-99(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120072430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.13e-46nuclear factor Y, subunit B11