PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10029284m

Common Name

CICLE_v10029284mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

DBB

Protein Properties

Length: 209aa MW: 22796.7 Da PI: 6.4922

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10029284m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.4	1.3e-07	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC++C ++ H Ciclev10029284m 4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33 7**************************998 PP
2	zf-B_box	28.4	3.3e-09	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g H Ciclev10029284m 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGgkrtH 91 5799****************************96555556 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.21	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.2E-8	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	4.38E-7	3	45	No hit	No description
Pfam	PF00643	4.3E-6	3	41	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.03	51	96	IPR000315	B-box-type zinc finger
SMART	SM00336	5.4E-11	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.0E-7	52	91	IPR000315	B-box-type zinc finger
CDD	cd00021	1.62E-7	54	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0010100	Biological Process	negative regulation of photomorphogenesis
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD MTVHVGGKRT HGRYLLLRQR VEFPGDKAGR LEELALQSLD 120 QNKITRDQTQ PFRITARENQ QNHRGSPVPM LDGNADGDGK VDNKLIDLNA RPNRGQASNN 180 QGMDVLSGTN HDSAGVVPVG SFKREPEN*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006423480.1	1e-154	B-box zinc finger protein 19
Refseq	XP_006487374.1	1e-154	B-box zinc finger protein 19
Refseq	XP_006487375.1	1e-154	B-box zinc finger protein 19
Refseq	XP_024035322.1	1e-154	B-box zinc finger protein 19
Swissprot	C0SVM5	1e-87	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A067EG40	1e-152	A0A067EG40_CITSI; Uncharacterized protein
TrEMBL	V4SD42	1e-152	V4SD42_9ROSI; Uncharacterized protein
STRING	XP_006487374.1	1e-153	(Citrus sinensis)
STRING	XP_006423480.1	1e-153	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2168	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	5e-90	DBB family protein

Link Out ? help Back to Top
Phytozome	Ciclev10029284m
Entrez Gene	18033594