PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10029131m | ||||||||
Common Name | CICLE_v10029032mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 251aa MW: 28368.4 Da PI: 5.7689 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 21.9 | 4.6e-07 | 4 | 28 | 1 | 25 |
NAM 1 lppGfrFhPtdeelvveyLkkkveg 25 lppG+rF Pt+eelv++yL +k+e+ Ciclev10029131m 4 LPPGYRFFPTEEELVSFYLINKLEE 28 79*******************9975 PP | |||||||
2 | NAM | 89.1 | 8.1e-28 | 33 | 111 | 50 | 128 |
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++++++w+fF++r++++++g r++r+t+sgyWkatg+ v+s++++++g+kkt+vfykg+ap+g+kt+W mheyr+ Ciclev10029131m 33 KCQGDTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPGYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRA 111 5667788**********************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 32.938 | 1 | 138 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-41 | 3 | 138 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-24 | 5 | 110 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEELPPGYRF FPTEEELVSF YLINKLEELC GEKCQGDTEQ WFFFTPRQER EERGGRPSRT 60 TASGYWKATG SPGYVYSSDN RVIGVKKTMV FYKGKAPTGR KTKWKMHEYR AIEGASNPSS 120 AVIPKLRHEF SLCRIYVKSE SFRAFDRRPL EAARREEQPH GGGATTSAPN NIMVRGNGSN 180 TSFQDAIMCD GDVATTSAQN NIMGPRSSSP ETSYSGEDHS DYPETNLDNN WNIVADPQPP 240 LWDWEQLNWP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-30 | 4 | 141 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 3e-30 | 4 | 141 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 3e-30 | 4 | 141 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 3e-30 | 4 | 141 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 3e-30 | 4 | 141 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 3e-30 | 4 | 141 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 3e-30 | 4 | 141 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 3e-30 | 4 | 141 | 20 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.11275 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424205.1 | 0.0 | NAC domain-containing protein 90 isoform X2 | ||||
Swissprot | Q9FMR3 | 6e-75 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | V4SF22 | 0.0 | V4SF22_9ROSI; Uncharacterized protein | ||||
STRING | XP_006424204.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 8e-73 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10029131m |
Entrez Gene | 18034113 |
Publications ? help Back to Top | |||
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