PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028925m
Common NameCICLE_v10028925mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 304aa    MW: 33928.7 Da    PI: 8.2123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028925mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12132179355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Ciclev10028925m 132 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 179
                      5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.777129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-17133192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-17133191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10133179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-13134183No hitNo description
SMARTSM003533.6E-14135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEDLSFMNQW HMMNSIDEFN LLPLAAAFGE NLQQSYTHPS FNNNTGIDRP QKQLKTSTWN  60
SSETGFNPNN VSSINMNQMG ILKPKQETGA GYPSDILPSQ VSFGNNQNYV FKASQGAKRI  120
SPGAGNRLSN TQDHIIAERK RREKLSQRFI ALSAIVPGLK KMDKASVLGD AIKYLKQLQE  180
KVKILEEQAN KKTIESVVFV NKTQLSDEGE SPNGAFNEAL PEIEARFCDK SVLIRVHCEK  240
RKGVFEKIVA EIEKLYLTVI NSSVMTFGSS VLDVTIIAQM DVEFNMTVMD LVKNLHSAFQ  300
LFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14133182857Transcription factor MYC2
5gnj_B1e-14133182857Transcription factor MYC2
5gnj_E1e-14133182857Transcription factor MYC2
5gnj_F1e-14133182857Transcription factor MYC2
5gnj_G1e-14133182857Transcription factor MYC2
5gnj_I1e-14133182857Transcription factor MYC2
5gnj_M1e-14133182857Transcription factor MYC2
5gnj_N1e-14133182857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142ERKRRE
2138143RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422677.20.0transcription factor bHLH25
SwissprotQ9T0725e-64BH025_ARATH; Transcription factor bHLH25
TrEMBLV4S6A10.0V4S6A1_9ROSI; Uncharacterized protein
STRINGXP_006422677.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-66bHLH family protein