PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027725m
Common NameCICLE_v10027725mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HB-PHD
Protein Properties Length: 1064aa    MW: 117068 Da    PI: 4.8914
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027725mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox406.6e-13886938352
                      --SS--...HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
         Homeobox   3 kRttft...keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                      +Rt++    +e ++ L + F++n+yp+++++e LAk+lgLt +qV+ WF N R
  Ciclev10027725m 886 HRTSYRklgEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTR 938
                      5555541116999**************************************99 PP
2PHD39.71.1e-13526581151
                      SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
              PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                      +C+ Cg+    ++++++lCdg C++ fH++Cl+++l +e++p +   wlC+ C++k
  Ciclev10027725m 526 YCAKCGSkdLSADNDIILCDGaCDRGFHQYCLEPPLLKEDIPPDdeGWLCPGCDCK 581
                      7******77677********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.42E-14516584IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.8E-13522581IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.145524581IPR019787Zinc finger, PHD-finger
PfamPF006283.8E-11526581IPR019787Zinc finger, PHD-finger
CDDcd155047.17E-27526578No hitNo description
SMARTSM002495.9E-10526579IPR001965Zinc finger, PHD-type
PROSITE patternPS013590527578IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.8E-15870938IPR009057Homeodomain-like
SuperFamilySSF466892.69E-13881943IPR009057Homeodomain-like
SMARTSM003891.9E-13883948IPR001356Homeobox domain
PROSITE profilePS5007113.912884944IPR001356Homeobox domain
CDDcd000864.69E-14884938No hitNo description
PfamPF000462.1E-10886938IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1064 aa     Download sequence    Send to blast
MSKAEHMGVS PSQVTSSTRD HSCLKQTTPE QMCKFCAECI HSEPLESKSL LGSEAVENEP  60
RETSIPNSEK LQAFCGDVPD SSFTDHLAPP SEDMRKSTQT NKASCSQQNT SEQKHGTELM  120
HNEQSEQKHQ LCYQIVFDKP QATSLVDNAT LQPVSKDVSK SSQTGNRQAL DFLSGNRCNE  180
LDVDCVHSEP LNQKHQLGSE IIQNEPAVNV ARLPSDGVEE NLQTISEDLT KVCPVEPSQS  240
PPRDANKSCQ AGEISCLQQS SSEQTPEFTP GISSHEPSVV NYKLGSQLEQ TELGETSAGE  300
LGASLELVVK SSIEQLKQLE VPITIPSTKT SATKHLQSSS DLMEKKSCLE QSETPPNYVA  360
NNSACLGRKG KRATKSLKNN YTVRSLIGSD RVLRSRSGER PLPPESSNNL ADVNSIGERK  420
QKKRNKIRRK KIVADEYSRI RTHLRYLLNR INYEQNLIDA YSSEGWKGLS VEKLKPEKEL  480
QRATSEILRR KLKIRDLFQR LDSLCAGGFP KSLFDSEGQI DSEDIYCAKC GSKDLSADND  540
IILCDGACDR GFHQYCLEPP LLKEDIPPDD EGWLCPGCDC KVDCIDLVNE LQGTRLFITD  600
NWEKVFPEAA AGHNQDPNFG LASDDSDDNE YDPDGSATDE QDEGDESSSD GSSSDDSDFT  660
STSDEVEAPA DDKTYLGLSS EDSEDDEYNP DAPELDDKVT QESSSSGSDF TSDSEDLAAV  720
LEDNRSSGND EGAASPLGHS NGQRYKDGGN NESLNNELLS IIKPGQDGAV PVYGKRSSER  780
LDYKKLYDET YGNVPYDSSD DESWSDDGGP RKRTKSTKEG SSASPDGKTP VIRRRKSTKA  840
AKEKLNETEN TPKRRGRPKL NTEDSNISPA KSHEGCSTPG SRGRRHRTSY RKLGEEVTQK  900
LYNSFKENQY PNRTTKESLA KELGLTFSQV RKWFENTRWS FNHPSSKNAE LANSEKGTCT  960
PQSNKNTVGR VSNCNGAENV QSSKTGVDDT GCMTGDVKNN TQECNSIKPT SQTSRKRDRD  1020
GKSGDQASDP SSKMEVIQGL SANSPKVEVQ ANGRTRRRRN SAV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419430KQKKRNKIRRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Primarily detected in root tissue.
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422879.10.0homeobox protein HAT3.1
SwissprotQ049961e-132HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLV4UA240.0V4UA24_9ROSI; Uncharacterized protein
STRINGXP_006422879.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.13e-95Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]