PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027158m
Common NameCICLE_v10027158mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 381aa    MW: 42062.8 Da    PI: 8.6565
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027158mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.1e-12186232455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR+++ ++f  L  +lP +     kK++Ka++L  A++Y+k+Lq
  Ciclev10027158m 186 DHIMAERKRREKLSQRFIALSAILPGL-----KKMDKASVLGDAIRYVKELQ 232
                      699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.186182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9186232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-16186244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-12187236No hitNo description
SuperFamilySSF474591.57E-16187245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-14188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDASSAKWLA ELGMDEYNII HQCHMESVAD LFSSKQDITA ALGGNLKQSL STSESYSSYP  60
NNNNNGKSQT SFDERPNKLL KTYSWKSTTT TDRASADHSS PTPQPHFLNF DQKPISSNPN  120
KQLYGNLNMY SCSLKPKVEA PPSTGNTTSP PPFPPLGSPN YETVINPNHG TKRSYPVTRT  180
PALAQDHIMA ERKRREKLSQ RFIALSAILP GLKKMDKASV LGDAIRYVKE LQERVKVLEE  240
QTKKRTVESV VYVKKSQLVV SGTDDESSSC DDNSEISTSD GTLPEIEARV SDKDVLIRIH  300
CEKQKGLLPK LISQLEMLHL SITNTSVLPF GNSTLDITII ALKNAEFCTT MKDLVKDIRL  360
AFLKLIVAGN HPKPDLALKA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13186241863Transcription factor MYC2
5gnj_B2e-13186241863Transcription factor MYC2
5gnj_E2e-13186241863Transcription factor MYC2
5gnj_F2e-13186241863Transcription factor MYC2
5gnj_G2e-13186241863Transcription factor MYC2
5gnj_I2e-13186241863Transcription factor MYC2
5gnj_M2e-13186241863Transcription factor MYC2
5gnj_N2e-13186241863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190195ERKRRE
2191196RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024036203.10.0transcription factor bHLH18
TrEMBLV4SQN00.0V4SQN0_9ROSI; Uncharacterized protein
STRINGXP_006426181.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-67bHLH family protein