PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10026862m | ||||||||
Common Name | CICLE_v10026862mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 87aa MW: 9644.6 Da PI: 8.9031 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.2 | 3.4e-07 | 15 | 59 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT +++ a + + ++ +W+ +a+ + g+t +++k ++ Ciclev10026862m 15 SWTVKQNKQFETALAFYDKDtpdRWDNVAKAVS-GKTVEDVKKHYE 59 7********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.336 | 11 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 3.7E-7 | 12 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-4 | 15 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.53E-12 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.85E-6 | 16 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 87 aa Download sequence Send to blast |
MASNTMTSSR SSGSSWTVKQ NKQFETALAF YDKDTPDRWD NVAKAVSGKT VEDVKKHYEL 60 LVKDINDIEA GRYPHPNYRS TTGTGN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-34 | 6 | 83 | 1 | 78 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ccl.308 | 1e-140 | fruit| vegetative tissue |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early expressed at stage two (plastochrons 7 and 8), when the floral meristem comprised a loaf-shaped bulge of cells. Expression was in the dorsal region of the floral meristem. At stage four, when sepal primordia had emerged around the meristem dome, expression could be seen in the dorsal sepal primordium. At stage five, expressed in emerging dorsal primordia of whorls two and three. In older flower buds (stages seven and eight), expression was found mainly in the dorsal petals and staminode. {ECO:0000269|PubMed:15790677}. | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in the dorsal region of developing flowers. {ECO:0000269|PubMed:15790677}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006425660.1 | 4e-59 | protein RADIALIS-like 4 | ||||
Refseq | XP_006466807.1 | 4e-59 | protein RADIALIS-like 4 | ||||
Swissprot | Q58FS3 | 1e-33 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A067GW91 | 1e-57 | A0A067GW91_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NRA0 | 1e-57 | A0A2H5NRA0_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SJ78 | 1e-57 | V4SJ78_9ROSI; Uncharacterized protein | ||||
STRING | XP_006466807.1 | 2e-58 | (Citrus sinensis) | ||||
STRING | XP_006425660.1 | 2e-58 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39250.1 | 4e-31 | RAD-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10026862m |
Entrez Gene | 18037390 |
Publications ? help Back to Top | |||
---|---|---|---|
|