PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026011m
Common NameCICLE_v10026011mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Dof
Protein Properties Length: 339aa    MW: 36374.2 Da    PI: 9.0264
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026011mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.34.5e-403494262
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     +e+alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk +
  Ciclev10026011m 34 QEQALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKIK 94
                     5799******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-273292IPR003851Zinc finger, Dof-type
PfamPF027012.1E-333692IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4323892IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104076IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMSSENILTT QAVMTKEENQ NPAGNRKTAS TRPQEQALKC PRCDSPNTKF CYYNNYSLTQ  60
PRHFCKTCRR YWTKGGALRN VPIGGGCRKN KKIKSSSRLS VDSKDSASSS EIGGFKFFHG  120
LSPAMDFQLG GLSFPRLNPS SAGICSQFSS FGDATSPSYF GLDPSASSAN HPLTGFNYPL  180
SSIVANTFGG AVQEMGSLNV NSSLASSIES LSSINQDLHW RLQQQRLAML FGGENQKETT  240
VASAQLETQT QKPQPILFQN LEISSKPQAP AVGNSRKEGA SGESTATEWF FGNSYAPVTA  300
GTPTTTSSGG NGGNDNTINN WNNGAQGWSD LHRYSGLP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426240.10.0dof zinc finger protein DOF5.7
TrEMBLV4SKT90.0V4SKT9_9ROSI; Uncharacterized protein
STRINGXP_006426240.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49502850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.11e-54Dof family protein