PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10025122m

Common Name

CICLE_v10025122mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 645aa MW: 70527.8 Da PI: 9.7212

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10025122m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Ciclev10025122m 152 FVCEICNKGFQRDQNLQLHRRGH 174 89*******************88 PP
2	zf-C2H2	12.3	0.0005	228	250	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Ciclev10025122m 228 WKCDKCSKRYAVQSDWKAHSKTC 250 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.2E-5	151	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.22E-7	151	174	No hit	No description
SMART	SM00355	0.017	152	174	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	152	174	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	154	174	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	193	223	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.3E-4	216	249	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.22E-7	223	248	No hit	No description
SMART	SM00355	140	228	248	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MMRGKKSKGQ IRQQAHNIHL FSSTSLSLSL SPPLSVSILC VQEDLCDSRF NLVKSPREKM 60 MKGLIFHQQQ QQQQQVLEEN MSNLTSQSGT EASVSSGNIR GAETTNHQQY FATPPTQAQP 120 PAKKKRNLPG NPDPDAEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL 180 KQRTSKEIRK KVYVCPEPNC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ 240 SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA EESTRAITGT NPILSSSSHH 300 QPGIVAGASS HVNLQIPQFN PQDFSAFSLK KEQQSYSLRQ EMPPWLGSQQ PSILGSAVPG 360 LGQPPSSSHT VDHLSSPSSS IFNTRLHQDH QFTQTTHQDL TRNDHPANPN PSLGPTLSVP 420 HTNYHQAMAS AFPHMSATAL LQKAAQMGAT MSSSKASTAT GNSSSSSSPA HHAALTRPHQ 480 QPPPPQQAHV SATPEHPAGN NKTKTTTGFG LNLSSREGVV HGLTPFGTKT SGGGSSGPFI 540 QEMLMNTSFS SGYAAASPFD DALTFGGVFN SKKEPHLNHS FNESSSLSRT SGINDHGEEM 600 TRDFLGLRAL SQTDILNIAG LGNCIDTRSS HEQQLNHSQK PWQG*

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MMRGKKSKGQ IRQQAHNIHL FSSTSLSLSL SPPLSVSILC VQEDLCDSRF NLVKSPREKM  60
MKGLIFHQQQ QQQQQVLEEN MSNLTSQSGT EASVSSGNIR GAETTNHQQY FATPPTQAQP  120
PAKKKRNLPG NPDPDAEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL  180
KQRTSKEIRK KVYVCPEPNC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ  240
SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA EESTRAITGT NPILSSSSHH  300
QPGIVAGASS HVNLQIPQFN PQDFSAFSLK KEQQSYSLRQ EMPPWLGSQQ PSILGSAVPG  360
LGQPPSSSHT VDHLSSPSSS IFNTRLHQDH QFTQTTHQDL TRNDHPANPN PSLGPTLSVP  420
HTNYHQAMAS AFPHMSATAL LQKAAQMGAT MSSSKASTAT GNSSSSSSPA HHAALTRPHQ  480
QPPPPQQAHV SATPEHPAGN NKTKTTTGFG LNLSSREGVV HGLTPFGTKT SGGGSSGPFI  540
QEMLMNTSFS SGYAAASPFD DALTFGGVFN SKKEPHLNHS FNESSSLSRT SGINDHGEEM  600
TRDFLGLRAL SQTDILNIAG LGNCIDTRSS HEQQLNHSQK PWQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-34	224	291	3	70	Zinc finger protein JACKDAW
5b3h_F	8e-34	224	291	3	70	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	190	KLKQRTSKEIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM465183	1e-131	AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024036713.1	0.0	protein indeterminate-domain 7
Refseq	XP_024036715.1	0.0	protein indeterminate-domain 7
Refseq	XP_024036716.1	0.0	protein indeterminate-domain 7
Refseq	XP_024036717.1	0.0	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-119	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	V4UKA4	0.0	V4UKA4_9ROSI; Uncharacterized protein
STRING	XP_006426554.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-118	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	Ciclev10025122m
Entrez Gene	18036342

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]