PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10023342m | ||||||||
Common Name | CICLE_v10023342mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 232aa MW: 25843.6 Da PI: 9.8249 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00035 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C + F++ L H+++H Ciclev10023342m 44 YNCSFCRREFRSAQALGGHMNVH 66 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.76E-6 | 41 | 70 | No hit | No description |
PROSITE profile | PS50157 | 11.157 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.5E-6 | 44 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
VLMNKKEVSM EWVKEKWECE KCSCSEAQHG QSSCGLIVWP PKNYNCSFCR REFRSAQALG 60 GHMNVHRRDR ARLRMLPPPL LQYRNPNPIP SFAASSTSSS SLSSPPSNKL LLPGPDPATY 120 KPKPLVSANL NSLSSSPSSA AFTNEYKKRL LEECPHQQIN TLSSTLPSGD YLRKKKNMRA 180 AFGAGNSKGY APKREIDVLR KKEELAMSLE LEMGLKDTKE SVDLELRLGY P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 4e-12 | 39 | 66 | 2 | 29 | superman protein |
2l1o_A | 4e-12 | 39 | 66 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015386218.2 | 1e-168 | zinc finger protein 11 | ||||
TrEMBL | A0A067FM45 | 1e-161 | A0A067FM45_CITSI; Uncharacterized protein (Fragment) | ||||
TrEMBL | V4VV39 | 1e-168 | V4VV39_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006443884.1 | 1e-169 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9575 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42410.1 | 6e-17 | zinc finger protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10023342m |
Entrez Gene | 18047643 |