PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023312m
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 286aa    MW: 32366.8 Da    PI: 8.278
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023312mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.93.9e-107414257128
              NAM  57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      e  +Fs +  k+ +g+r+ r + +g+W+     k v+s+ ++e++g  k + + k ++p+     W+mhey+l
  Ciclev10023312m  74 EDLYFSLK--KSVNGSRTDRRVGAGTWQGEEAGKVVVSRnSREKIGSNKRFRYEKDKSPH--DGCWIMHEYSL 142
                      44566665..446899************9999999988867788*********9777776..89*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.5117164IPR003441NAC domain
SuperFamilySSF1019412.09E-1171163IPR003441NAC domain
PfamPF023651.3E-675142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MVFQIMNKSP TKFGSTDKGV LLSGLTEFAP QFESQGSRLC WENLCLSVRT EISSLSCGTG  60
LKMQFGGPNV EDGEDLYFSL KKSVNGSRTD RRVGAGTWQG EEAGKVVVSR NSREKIGSNK  120
RFRYEKDKSP HDGCWIMHEY SLNPSLLPQN LECSDLVPCQ IRKNGEPGME KSRNRKLTNL  180
LLKKTLISLH LLSRVTDTRY QQMPLTDQIP HHQLQLSVEE YQSTVQTPFI LEEKQDIARI  240
DNVLPGTEQS IYDQLDKLLK ISSKCFRLHQ TSKAINTQTF DDTFQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2H5N7671e-145A0A2H5N767_CITUN; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.13e-08NAC domain containing protein 70