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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10021952m |
Common Name | CICLE_v10019979mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
C3H |
Protein Properties |
Length: 241aa MW: 26009.8 Da PI: 7.6869 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10021952m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 27.8 | 4.4e-09 | 1 | 17 | 10 | 26 |
GGTS--TTTTT-SS-SS CS
zf-CCCH 10 artGtCkyGdrCkFaHg 26
+r+G CkyG++C+F+H+
Ciclev10021952m 1 MRNGSCKYGANCRFNHP 17
89**************9 PP
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2 | zf-CCCH | 29.5 | 1.3e-09 | 128 | 154 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C++f+rtG Cky ++Ck++H++
Ciclev10021952m 128 PGQPECSYFLRTGDCKYKSNCKYHHPK 154
5789*********************96 PP
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3 | zf-CCCH | 34.6 | 3.3e-11 | 175 | 199 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++ C++++r+G+Ck+G+ Ck+ H+
Ciclev10021952m 175 GQNVCSYYSRYGICKFGPACKYDHP 199
6678********************8 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Pfam | PF00642 | 1.4E-6 | 1 | 17 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 21 | 1 | 18 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.164 | 1 | 19 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-4 | 2 | 16 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.314 | 127 | 155 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 127 | 154 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-7 | 129 | 154 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 131 | 156 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 133 | 153 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 171 | 199 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-6 | 173 | 200 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.558 | 173 | 201 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 175 | 199 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MRNGSCKYGA NCRFNHPDPT AVGGSDSPSG YGNGGSVSSQ APSQASIGSW SSPRALNEPA 60 PFVPMMYSPT PGVPSQNSEW NGYQSPLYPQ ERSVQSAPTY VINNNPLVDN VQIIHQPQML 120 VDEFPERPGQ PECSYFLRTG DCKYKSNCKY HHPKNRIPKS PPCTLSDKGL PLRPGQNVCS 180 YYSRYGICKF GPACKYDHPI HPDASAEYGL DPPPSFGDST TRQETGMAGT GNGNGSDKNI 240 *
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