PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10021877m | ||||||||
Common Name | CICLE_v10021877mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 248aa MW: 28729 Da PI: 4.6953 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 4.9e-19 | 32 | 86 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le +Fe++ + +++ +LAk+lgL+ rqV +WFqN+Ra++k Ciclev10021877m 32 KNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 86 56779*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.9 | 5.6e-38 | 33 | 124 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+++LE +Fe+e++Lep++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L++++++l+++ e+L+ke+++L +l++ Ciclev10021877m 33 NKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQK 124 79************************************************************************************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.08E-19 | 12 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.75 | 28 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-16 | 30 | 92 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.3E-16 | 32 | 86 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-19 | 33 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.44E-14 | 37 | 89 | No hit | No description |
PRINTS | PR00031 | 9.1E-6 | 59 | 68 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 63 | 86 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.1E-6 | 68 | 84 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.1E-15 | 88 | 130 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MLDGGEYSPA AEPYSCMNEI TTTTTTRKKK CKNKRRFSDE QIRSLELMFE NETRLEPRKK 60 LQLAKELGLQ PRQVAIWFQN KRARWKSKQL ERDYNILQAN FNNLASRFEA LKKEKQALVI 120 QLQKTNELLQ NKPRREDQSP SERQCCGQVE GVNSMESELD NGDRDTNKCE SEVKPSLSAE 180 LRLGVLSDDD SSIKTEYFGL HEDEPNLMTM VEPAESSMTS PEDWGNFESD GLFDQSSSEY 240 QWWDFWS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006444770.1 | 0.0 | homeobox-leucine zipper protein ATHB-7 | ||||
Refseq | XP_006491341.1 | 0.0 | homeobox-leucine zipper protein ATHB-7 | ||||
Swissprot | P46897 | 9e-80 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A067HEZ9 | 0.0 | A0A067HEZ9_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5P083 | 0.0 | A0A2H5P083_CITUN; Uncharacterized protein | ||||
TrEMBL | V4U1T1 | 0.0 | V4U1T1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006491341.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006444770.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2498 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 3e-78 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10021877m |
Entrez Gene | 18047053 |
Publications ? help Back to Top | |||
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