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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10021165m |
Common Name | CICLE_v10021165mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
C3H |
Protein Properties |
Length: 324aa MW: 36589.8 Da PI: 7.2592 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10021165m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 38.2 | 2.4e-12 | 185 | 210 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
y +C+++ +tG+C yGd+CkF+H+
Ciclev10021165m 185 YQPDICKDYKETGYCGYGDSCKFMHD 210
67789********************7 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SuperFamily | SSF90229 | 1.7E-9 | 182 | 215 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 184 | 211 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 184 | 212 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-12 | 185 | 215 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-10 | 185 | 210 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 4.5E-13 | 257 | 303 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13920 | 1.6E-8 | 261 | 302 | No hit | No description |
SuperFamily | SSF57850 | 1.93E-12 | 261 | 304 | No hit | No description |
PROSITE profile | PS50089 | 10.468 | 262 | 300 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 5.2E-4 | 262 | 299 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 8.62E-8 | 262 | 303 | No hit | No description |
PROSITE pattern | PS00518 | 0 | 277 | 286 | IPR017907 | Zinc finger, RING-type, conserved site |
Sequence ? help Back to Top |
Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MAESGSGEAQ QAEQVCNFFR KPTKNKNIRK RTIREDEDED SIESSVLQNL KKPTKPDSKL 60 YFSTGPSKRD TSADSNADSE KPIFQFESSK EIQVQHDSKA TATLETETDF LRDSRALREK 120 VLKRSEEALK GKASGDEKLY KGIHGYVDHK AGFRREHTVS SEKAGGSHGP LRASAHIRVT 180 ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQM EKEWEEAEKA RKRNLALGGG 240 DSDEEGVGQS DDDDEDSLPF ACFICRKPFV DPVVTKCKHY FCEHCALKHH SKNKKCFVCN 300 EPTLGIFNTA LEIRKRMAEE GKK*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5z56_M | 6e-61 | 97 | 317 | 113 | 317 | RING finger protein 113A |
5z58_M | 6e-61 | 97 | 317 | 113 | 317 | RING finger protein 113A |
6ff4_t | 6e-61 | 97 | 317 | 113 | 317 | RING finger protein 113A |
6ff7_t | 6e-61 | 97 | 317 | 113 | 317 | RING finger protein 113A |
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