PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021155m
Common NameCICLE_v10021117mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 325aa    MW: 36536.3 Da    PI: 8.3727
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021155mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.12.9e-52181431129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhP+d+elv++yL kkv++++ ++   ++ vd++k+ePwd+p+++  + kewyf+s+rd+kyatg r+nrat+sgyWkatgkd+++l+
  Ciclev10021155m  18 LPPGFRFHPRDDELVCDYLMKKVTHTNESI--LLAAVDLNKCEPWDIPETACVGGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRAILR 109
                      79**********************999666..79**************7777799**************************************9 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       kg+lvg++ktLvfy+grapkg+kt+Wvmhe+rle
  Ciclev10021155m 110 -KGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLE 143
                      .999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5910167IPR003441NAC domain
PROSITE profilePS5100556.21818167IPR003441NAC domain
PfamPF023655.6E-2719142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSSSNNSNNN IRMVEAQLPP GFRFHPRDDE LVCDYLMKKV THTNESILLA AVDLNKCEPW  60
DIPETACVGG KEWYFYSQRD RKYATGLRTN RATASGYWKA TGKDRAILRK GSLVGMRKTL  120
VFYRGRAPKG KKTEWVMHEF RLEGPFANSP KASSLKEDWV LCRVFYKKRE VPGQQSMGSC  180
SYDDTGSSSL PPLMDSYITF NQTLPNFQDN YNELVSCFSI LSSSQQDQII TNNPIFTHFN  240
HSEPNNIIST KNSTTFGKNI PVGTDCLDPV ACDKKVIKAV LNQLTKIESN VPNMQGSSPS  300
LGEPSPDSYL SEVGMPTNMW NHHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-511316812166NO APICAL MERISTEM PROTEIN
1ut4_B4e-511316812166NO APICAL MERISTEM PROTEIN
1ut7_A4e-511316812166NO APICAL MERISTEM PROTEIN
1ut7_B4e-511316812166NO APICAL MERISTEM PROTEIN
3swm_A4e-511316815169NAC domain-containing protein 19
3swm_B4e-511316815169NAC domain-containing protein 19
3swm_C4e-511316815169NAC domain-containing protein 19
3swm_D4e-511316815169NAC domain-containing protein 19
3swp_A4e-511316815169NAC domain-containing protein 19
3swp_B4e-511316815169NAC domain-containing protein 19
3swp_C4e-511316815169NAC domain-containing protein 19
3swp_D4e-511316815169NAC domain-containing protein 19
3ulx_A6e-511417011171Stress-induced transcription factor NAC1
4dul_A4e-511316812166NAC domain-containing protein 19
4dul_B4e-511316812166NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006477997.10.0NAC domain-containing protein 21/22 isoform X2
SwissprotQ84TE61e-113NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLV4TRD20.0V4TRD2_9ROSI; Uncharacterized protein
STRINGXP_006477997.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-112NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]