PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021100m
Common NameCICLE_v10021100mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Dof
Protein Properties Length: 330aa    MW: 35969.9 Da    PI: 6.8271
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021100mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.85.7e-392989262
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+ss
  Ciclev10021100m 29 NHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSS 89
                     57899****************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-282787IPR003851Zinc finger, Dof-type
PfamPF027013.7E-333187IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6743387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MQDIHSIGGG RLFGGGGGDR RLRPHPHQNH QALKCPRCDS LNTKFCYYNN YNLSQPRHFC  60
KNCRRYWTKG GVLRNVPVGG GCRKTKRSSK PKPNSESSAQ TQTQTQTEAP AAGERDRKAN  120
SHSSSESSST LTVTNNNNNN NTSVETVSVH SSSSVSNVLS AMNNNNNNNN NDPGFETAPT  180
TALLDQASSD CGIFSEIGSF TSLITSSNEA LPFGFSNLLN NAQQNLEHVQ NEQQWQQEQQ  240
KLASASSMGG HHELKLHEMA SGLLDQTVHD ELSALQDRSG NTGGFGSLDW HGSADHQGLF  300
DLPNAVDHAS YWSQSTQWTD QDHPSLYLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1816GGRLFGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00570DAPTransfer from AT5G60850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440822.10.0dof zinc finger protein DOF5.4
TrEMBLV4TKY00.0V4TKY0_9ROSI; Uncharacterized protein
STRINGXP_006440822.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44822656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.14e-39OBF binding protein 4