PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020545m
Common NameCICLE_v10020545mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CO-like
Protein Properties Length: 388aa    MW: 43930.6 Da    PI: 6.2292
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020545mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.4e-071961339
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      r C+ +++  + l+C+ +   lC  C  e H+       H++
  Ciclev10020545m 19 GRLCDYCNDRVAVLYCRADTAKLCLFCDKEVHSTnqlfskHSR 61
                     689*****************************66777777776 PP
2zf-B_box27.94.7e-0961109242
         zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg........Htvvpl 42 
                      + + C+ ++  ++++fCe+ ++ lC +C  e+H++        H+++p+
  Ciclev10020545m  61 RSQLCDVCDASPASIFCETEHSVLCTNCDWESHSQsnlrvssvHNRRPI 109
                      5689*****************************7788999999988876 PP
3CCT621.9e-21343385143
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                      R+ al+RYkeK+ktR+++K++rYesRK++AesR R+KGrF+k 
  Ciclev10020545m 343 RDSALSRYKEKKKTRRYDKHVRYESRKVRAESRTRIKGRFAKI 385
                      899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.5661764IPR000315B-box-type zinc finger
SMARTSM003363.7E-131764IPR000315B-box-type zinc finger
PfamPF006438.0E-61862IPR000315B-box-type zinc finger
CDDcd000211.21E-62064No hitNo description
PROSITE profilePS5011910.56660109IPR000315B-box-type zinc finger
PfamPF006436.1E-662108IPR000315B-box-type zinc finger
CDDcd000218.55E-664109No hitNo description
SMARTSM003360.2965109IPR000315B-box-type zinc finger
PfamPF062039.1E-16343384IPR010402CCT domain
PROSITE profilePS5101714.574343385IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MTGATQATEH EQRQDQRKGR LCDYCNDRVA VLYCRADTAK LCLFCDKEVH STNQLFSKHS  60
RSQLCDVCDA SPASIFCETE HSVLCTNCDW ESHSQSNLRV SSVHNRRPIE SFSGCPSVNE  120
MFAIIGFDDL DSKALFLNDE TRNYSHFDGV DSDGFSDLFA WETPDFVSLD DLIVSSNAGH  180
NFQAIGVPPL PKNRNAAGGQ HKEEMLHQLR QLAKLDPNFK YENANIDEPI VGFHSLVPEP  240
ISQPGNMNTG SELDAEPNRF PAYEASTLQW FGDSFDHANQ LPSTLFKSCK EESFIVPEKH  300
FDTDGFVKNI NEGGEGQSQH PTNTEKSSVF HRVSVHELNS QERDSALSRY KEKKKTRRYD  360
KHVRYESRKV RAESRTRIKG RFAKIDH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444238.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_024045635.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A067H8R20.0A0A067H8R2_CITSI; Uncharacterized protein
TrEMBLV4TAX40.0V4TAX4_9ROSI; Uncharacterized protein
STRINGXP_006444238.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-104B-box type zinc finger protein with CCT domain