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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10020545m |
Common Name | CICLE_v10020545mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
CO-like |
Protein Properties |
Length: 388aa MW: 43930.6 Da PI: 6.2292 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10020545m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 22 | 3.4e-07 | 19 | 61 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
r C+ +++ + l+C+ + lC C e H+ H++
Ciclev10020545m 19 GRLCDYCNDRVAVLYCRADTAKLCLFCDKEVHSTnqlfskHSR 61
689*****************************66777777776 PP
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2 | zf-B_box | 27.9 | 4.7e-09 | 61 | 109 | 2 | 42 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg........Htvvpl 42
+ + C+ ++ ++++fCe+ ++ lC +C e+H++ H+++p+
Ciclev10020545m 61 RSQLCDVCDASPASIFCETEHSVLCTNCDWESHSQsnlrvssvHNRRPI 109
5689*****************************7788999999988876 PP
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3 | CCT | 62 | 1.9e-21 | 343 | 385 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43
R+ al+RYkeK+ktR+++K++rYesRK++AesR R+KGrF+k
Ciclev10020545m 343 RDSALSRYKEKKKTRRYDKHVRYESRKVRAESRTRIKGRFAKI 385
899**************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 388 aa
Download sequence Send
to blast |
MTGATQATEH EQRQDQRKGR LCDYCNDRVA VLYCRADTAK LCLFCDKEVH STNQLFSKHS 60 RSQLCDVCDA SPASIFCETE HSVLCTNCDW ESHSQSNLRV SSVHNRRPIE SFSGCPSVNE 120 MFAIIGFDDL DSKALFLNDE TRNYSHFDGV DSDGFSDLFA WETPDFVSLD DLIVSSNAGH 180 NFQAIGVPPL PKNRNAAGGQ HKEEMLHQLR QLAKLDPNFK YENANIDEPI VGFHSLVPEP 240 ISQPGNMNTG SELDAEPNRF PAYEASTLQW FGDSFDHANQ LPSTLFKSCK EESFIVPEKH 300 FDTDGFVKNI NEGGEGQSQH PTNTEKSSVF HRVSVHELNS QERDSALSRY KEKKKTRRYD 360 KHVRYESRKV RAESRTRIKG RFAKIDH*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT2G47890.1 | 1e-104 | B-box type zinc finger protein with CCT domain |