PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020200m
Common NameCICLE_v10019979mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 437aa    MW: 48683.4 Da    PI: 4.5556
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020200mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.12.9e-13127148526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C f+++tGtCk+G++CkF+H+
  Ciclev10020200m 127 DCTFYMKTGTCKFGSNCKFNHP 148
                      7********************9 PP
2zf-CCCH39.31.1e-12189213226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++r+G CkyG++C+F+H+
  Ciclev10020200m 189 GEKECPYYMRNGSCKYGANCRFNHP 213
                      6789********************9 PP
3zf-CCCH28.42.8e-09324350127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++f+rtG Cky ++Ck++H++
  Ciclev10020200m 324 PGQPECSYFLRTGDCKYKSNCKYHHPK 350
                      5789*********************96 PP
4zf-CCCH33.57.1e-11371395226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++  C++++r+G+Ck+G+ Ck+ H+
  Ciclev10020200m 371 GQNVCSYYSRYGICKFGPACKYDHP 395
                      6678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.7E-6122149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-7122150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544122150IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-11127148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5128147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591188215IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-6189214IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-10189213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6190214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5193212IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4323350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314323351IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-7325350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5327352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-4329349IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6367395IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6369396IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.558369397IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8371395IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MELSELISVP NLNHEKTKFE LGLQSSSPKS DLDPPPSDLD YTAGIEEELR NLDLREAEEI  60
DSIKAAEIEI VVEEEDEEEE EEEEEESESD ENNKSNIIVQ NEIQNENEYG NQMRKRYPYP  120
VRPDAQDCTF YMKTGTCKFG SNCKFNHPVR RKNQSSKEKV KEREELIERP GQSQSQGQSE  180
SQSQIECKGE KECPYYMRNG SCKYGANCRF NHPDPTAVGG SDSPSGYGNG GSVSSQAPSQ  240
ASIGSWSSPR ALNEPAPFVP MMYSPTPGVP SQNSEWNGYQ SPLYPQERSV QSAPTYVINN  300
NPLVDNVQII HQPQMLVDEF PERPGQPECS YFLRTGDCKY KSNCKYHHPK NRIPKSPPCT  360
LSDKGLPLRP GQNVCSYYSR YGICKFGPAC KYDHPIHPDA SAEYGLDPPP SFGDSTTRQE  420
TGMAGTGNGN GSDKNI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.21441e-119flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440011.10.0zinc finger CCCH domain-containing protein 43 isoform X2
SwissprotQ9STM41e-114C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLV4TTN00.0V4TTN0_9ROSI; Uncharacterized protein
STRINGXP_006440009.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-112C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]