PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019979m
Common NameCICLE_v10019979mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 477aa    MW: 53161.7 Da    PI: 4.8615
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019979mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH413.2e-13127148526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C f+++tGtCk+G++CkF+H+
  Ciclev10019979m 127 DCTFYMKTGTCKFGSNCKFNHP 148
                      7********************9 PP
2zf-CCCH30.56.3e-10186206525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      +C++++rtG Ck+G  C+F+H
  Ciclev10019979m 186 ECKYYLRTGGCKFGKACRFNH 206
                      7******************** PP
3zf-CCCH39.87.4e-13229253226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++r+G CkyG++C+F+H+
  Ciclev10019979m 229 GEKECPYYMRNGSCKYGANCRFNHP 253
                      7899********************9 PP
4zf-CCCH28.33.1e-09364390127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++f+rtG Cky ++Ck++H++
  Ciclev10019979m 364 PGQPECSYFLRTGDCKYKSNCKYHHPK 390
                      5789*********************96 PP
5zf-CCCH33.37.9e-11411435226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++  C++++r+G+Ck+G+ Ck+ H+
  Ciclev10019979m 411 GQNVCSYYSRYGICKFGPACKYDHP 435
                      6678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.7E-6122149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-7122150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544122150IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-11127148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5128147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117181209IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4181208IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-8186206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5186209IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4187208IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.324227255IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7227254IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10229253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6229254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5233252IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4363390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314363391IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6365390IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5367392IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6407435IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.558409437IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6409436IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8411435IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MELSELISVP NLNHEKTKFE LGLQSSSPKS DLDPPPSDLD YTAGIEEELR NLDLREAEEI  60
DSIKAAEIEI VVEEEDEEEE EEEEEESESD ENNKSNIIVQ NEIQNENEYG NQMRKRYPYP  120
VRPDAQDCTF YMKTGTCKFG SNCKFNHPVR RKNQSSKEKV KEREELIERP GQSQSQGQSE  180
SQSQIECKYY LRTGGCKFGK ACRFNHTRAK STVAPVLELN FLGLPIRPGE KECPYYMRNG  240
SCKYGANCRF NHPDPTAVGG SDSPSGYGNG GSVSSQAPSQ ASIGSWSSPR ALNEPAPFVP  300
MMYSPTPGVP SQNSEWNGYQ SPLYPQERSV QSAPTYVINN NPLVDNVQII HQPQMLVDEF  360
PERPGQPECS YFLRTGDCKY KSNCKYHHPK NRIPKSPPCT LSDKGLPLRP GQNVCSYYSR  420
YGICKFGPAC KYDHPIHPDA SAEYGLDPPP SFGDSTTRQE TGMAGTGNGN GSDKNI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.21441e-119flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440009.10.0zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ9STM41e-144C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLV4VKL30.0V4VKL3_9ROSI; Uncharacterized protein
STRINGXP_006440009.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-142C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]