PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10019872m

Common Name

CICLE_v10019872mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 493aa MW: 53208.5 Da PI: 6.2597

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10019872m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	98	157	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ Ciclev10019872m 98 PDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHF 157 68999*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	85	155	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.5E-32	100	156	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.723	102	156	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	104	140	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MNGGDMSAPI KDPAIKLFGA KIPVPDTRIP DVCKQITKEE AEDNHEYNSE EPDKSSSLNN 60 VKEGARNFVQ ANGIQANAKT KADQSESNAD QEKAFKRPDK IIPCPRCNSM DTKFCYFNNY 120 NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG RRKNKHFASQ YRQILVSSDG VPVTGLETPN 180 SANQQLMPCG DSATTFRPST GNGTVLKFGP ETPLCESMEN VLNLRDQKRS VEICTVTCVE 240 NKEEPSSSGS QVTASSIRGN ELPESVMQKE QVMMTGSCNE LNMQQSMHCY PVSPWGVPWN 300 PNNVASMEAA QNPSDRVCVP NGSNPGPVQW CPTTVLAVPG FCAPNIPLQF VPASYWGMGV 360 WAAGAGNIPL TGSNGCLSPS SSTSNNSCCS GNGSPTLGKH SRDPNLTDEG QSEKCVLVPK 420 TLRIDDPDEA SRSPIWATLG FKPDQKDLKS GGAIFKDFET KKGGKADVLD GAEILESNPA 480 ALSRSHTFQE ST*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MNGGDMSAPI KDPAIKLFGA KIPVPDTRIP DVCKQITKEE AEDNHEYNSE EPDKSSSLNN  60
VKEGARNFVQ ANGIQANAKT KADQSESNAD QEKAFKRPDK IIPCPRCNSM DTKFCYFNNY  120
NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG RRKNKHFASQ YRQILVSSDG VPVTGLETPN  180
SANQQLMPCG DSATTFRPST GNGTVLKFGP ETPLCESMEN VLNLRDQKRS VEICTVTCVE  240
NKEEPSSSGS QVTASSIRGN ELPESVMQKE QVMMTGSCNE LNMQQSMHCY PVSPWGVPWN  300
PNNVASMEAA QNPSDRVCVP NGSNPGPVQW CPTTVLAVPG FCAPNIPLQF VPASYWGMGV  360
WAAGAGNIPL TGSNGCLSPS SSTSNNSCCS GNGSPTLGKH SRDPNLTDEG QSEKCVLVPK  420
TLRIDDPDEA SRSPIWATLG FKPDQKDLKS GGAIFKDFET KKGGKADVLD GAEILESNPA  480
ALSRSHTFQE ST*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443525.1	0.0	cyclic dof factor 3
Refseq	XP_006479196.1	0.0	cyclic dof factor 3-like
TrEMBL	V4TYF2	0.0	V4TYF2_9ROSI; Uncharacterized protein
STRING	XP_006479196.1	0.0	(Citrus sinensis)
STRING	XP_006443525.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15591	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	3e-68	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Ciclev10019872m
Entrez Gene	18047454