PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017579m
Common NameCICLE_v10017579mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 330aa    MW: 37506.6 Da    PI: 5.9471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017579mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.4e-06183226755
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++ r RR+ri ++ +eL +l+P         +++ ae+ + A +Y+k Lq
  Ciclev10017579m 183 IAARERRRRITEKTQELGKLIPGgH------RMNTAEMFQAASKYVKFLQ 226
                      56799*****************955......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.547176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-10180238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-8182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-9182233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MALSYCSNWE SLQQLNSDML SYSSNSSFHH HHQQPQQLQQ QAQVVLPQLL DETLFSFGNN  60
SGGCFEFSDT LLDPFLPPDE FFYGDSYTNL LPYFSSPSDA LISLSPEIFP PEDLESCQLP  120
KRQKSHHCDS NFAPNFFYGY VPNPPLMPEF LPEIPAPVTQ FQAPKPESSV KKPNGTSLSV  180
QSIAARERRR RITEKTQELG KLIPGGHRMN TAEMFQAASK YVKFLQAQVK VLQLIQPKQQ  240
LLIVHHIMQQ EMKEPFHMHA QDLQNLLASP IIQEKLYSED KCLVPKEFVE TLANDPEIQS  300
KPMVFQGIDQ LLRTNIGVFS GRRFYDLAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468467.10.0transcription factor bHLH52
TrEMBLV4U7W40.0V4U7W4_9ROSI; Uncharacterized protein
STRINGXP_006448827.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.16e-25bHLH family protein