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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Ciclev10017535m |
| Common Name | CICLE_v10017535mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
RAV |
| Protein Properties |
Length: 333aa MW: 38163.8 Da PI: 8.6465 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10017535m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 30.9 | 7e-10 | 48 | 95 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
++kGV ++g W A+I+ + +r++lg+f ++ eAa a++ a+ k++g
Ciclev10017535m 48 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEREAAMAYDSAAIKIRG 95
789996.566899****999......44**********99************998 PP
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| 2 | B3 | 83.8 | 1.6e-26 | 172 | 267 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80
f+k+ltpsdv+k++rlv+pkk+a ++ gg+ +++l++ d+ r W+++++++++s++yv+t+GW++Fvk+++Lke+D++
Ciclev10017535m 172 FQKELTPSDVGKLNRLVIPKKYAVKYfpfisenaeenainGGV--DDMELVFFDKLMRPWKFRYCFWRSSQSYVFTRGWNRFVKEKKLKEKDII 263
99***************************99877776665544..889********************************************** PP
EEEE CS
B3 81 vFkl 84
+F+
Ciclev10017535m 264 TFYA 267
**94 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MEEDASSMVS NAKTNANNTE ASDSNNSTSG LQPAPKRMRH GKNVSLVKFK GVVPQQNGHW 60
GAQIYANHQR IWLGTFKSER EAAMAYDSAA IKIRGGDSHR NFPWTDTNNQ EPNFQNQYST 120
EAVLNMIRDG TYQPKFADYL RVQSQREDNN SNASLNQIMV HGDEQFAYRQ LFQKELTPSD 180
VGKLNRLVIP KKYAVKYFPF ISENAEENAI NGGVDDMELV FFDKLMRPWK FRYCFWRSSQ 240
SYVFTRGWNR FVKEKKLKEK DIITFYACEC ANGAKEGQNF FLVDVIHCEG QNCNVVKKPV 300
QLEQITGKIF SYNEKESNSE EKGFKLFGVQ IN*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
