PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016383m

Common Name

CICLE_v10016383mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bZIP

Protein Properties

Length: 250aa MW: 27944.4 Da PI: 10.0487

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016383m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.1	7.8e-13	194	239	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r rrk+kNRe+A rsR+RK+a+ eL kv Le+eN +Lkke e Ciclev10016383m 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKE 239 5889**************************************9965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.6E-7	190	248	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.818	192	237	IPR004827	Basic-leucine zipper domain
CDD	cd14707	8.92E-16	194	239	No hit	No description
Pfam	PF00170	3.4E-11	194	239	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.78E-10	194	240	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-11	194	239	No hit	No description
PROSITE pattern	PS00036	0	197	212	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MGIQTMGSQS NGQQSHLQPS LVRQNSWYSL TLNEVENQLG NLGKPLGSMN LDELLKSVWS 60 TEANDSTGID IENSSTASSS LQRQASLTLA RALSGKTVEQ VWNEIQQGQK KRYGQEMKSH 120 QREPTLGEMT LEDFLVQAGL FAEASVSPMD LDTVGVVTMQ SFPEKMSLSP SSSIGTLTPR 180 RKRDDNAFEK SIERRLRRKI KNRESAARSR ARKQAYHNEL VSKVSRLEEE NLKLKKEKEA 240 STIFLLRSN*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC008713	5e-32	KC008713.1 Camellia sinensis bZIP transcription factor family protein 3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024046120.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
Swissprot	Q9LES3	5e-58	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	V4U1B9	0.0	V4U1B9_9ROSI; Uncharacterized protein
STRING	XP_006446407.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16714	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	6e-53	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Ciclev10016383m
Entrez Gene	18051482

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]