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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Ciclev10016232m |
| Common Name | CICLE_v10016232mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
C3H |
| Protein Properties |
Length: 275aa MW: 30534.5 Da PI: 8.3688 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10016232m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 19.1 | 2.3e-06 | 18 | 39 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27
C+f++ t Ck+G+ C+F+H++
Ciclev10016232m 18 CKFYQGTEGCKHGEACRFSHSM 39
**9*9999************95 PP
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| 2 | zf-CCCH | 23.3 | 1.1e-07 | 71 | 92 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27
C++++ G CkyG++CkF+H++
Ciclev10016232m 71 CKYHLSAGGCKYGNTCKFSHSK 92
********************95 PP
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| 3 | zf-CCCH | 35.8 | 1.4e-11 | 122 | 143 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C+f++r+G C yG C+F+H+
Ciclev10016232m 122 ECPFYMRNGSCAYGVDCRFNHP 143
7********************9 PP
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| 4 | zf-CCCH | 38.9 | 1.4e-12 | 237 | 263 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++lC++f++tG Cky + CkF+H++
Ciclev10016232m 237 PGEPLCDYFMKTGNCKYRSACKFHHPK 263
589**********************96 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 1.1 | 12 | 39 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.178 | 12 | 40 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.97E-5 | 16 | 41 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.7E-4 | 18 | 40 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.19 | 65 | 92 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 11.122 | 65 | 93 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.27E-5 | 70 | 94 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.7E-6 | 71 | 92 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.7E-5 | 71 | 93 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.732 | 117 | 145 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.9E-4 | 117 | 144 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.26E-5 | 119 | 144 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.4E-9 | 122 | 143 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 123 | 142 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.3E-6 | 236 | 263 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.511 | 236 | 264 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.2E-8 | 238 | 263 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.41E-6 | 240 | 264 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 241 | 262 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MKESKGEGLM EKTVQIQCKF YQGTEGCKHG EACRFSHSME KSENPLPFSG VNGMKESKGG 60
SLVEMTGLIG CKYHLSAGGC KYGNTCKFSH SKEKPQTYIK KSEKASPELN FLGLPIRVHE 120
IECPFYMRNG SCAYGVDCRF NHPDPVADEG SDHFNEASNP ASRSWSPNII SRKTVPNLDN 180
HSFHPHWMLK SKFNSLQGSV YPQAKAELAL SSPALGNLTK TADTSTYHQF NEFPERPGEP 240
LCDYFMKTGN CKYRSACKFH HPKNGDGKSP VCTW*
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