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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Ciclev10016092m |
| Common Name | CICLE_v10016092mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
C3H |
| Protein Properties |
Length: 301aa MW: 31733.8 Da PI: 9.7157 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10016092m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 23.6 | 8.8e-08 | 107 | 132 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
k +lC+ + Ck+Gd+C+FaHg+
Ciclev10016092m 107 KSRLCNKYNSAEGCKFGDKCHFAHGE 132
6799******99************96 PP
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| 2 | zf-CCCH | 37 | 5.8e-12 | 267 | 291 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC +fa+ G C +GdrC+FaHg
Ciclev10016092m 267 FKTKLCENFAK-GSCTFGDRCHFAHG 291
69*********.*************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 1.7 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.042 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.33E-6 | 38 | 63 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.3E-7 | 39 | 62 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 1.8 | 45 | 62 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 2.4E-13 | 103 | 136 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.09E-7 | 104 | 136 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.112 | 105 | 133 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.025 | 107 | 132 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.3E-5 | 107 | 132 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 1.61E-14 | 170 | 247 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 9.4E-13 | 176 | 246 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 1.4E-15 | 177 | 245 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 13.9 | 177 | 241 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 1.8E-11 | 179 | 243 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 1.60E-13 | 181 | 241 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-16 | 263 | 297 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-7 | 266 | 292 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.33E-9 | 266 | 296 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.084 | 266 | 293 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.0E-9 | 267 | 291 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MELGGGRKRG RHDGASNGNG GFKKSKQEME NFPTGIGSKS KPCTKFFSTS GCPFGEGCHF 60
LHYVPGGFKA VSQMLNLGGT PAHPPPPPRN SGAPPSFPDG SSPPAVKSRL CNKYNSAEGC 120
KFGDKCHFAH GEWELGRPTV PSYEDPRAMG GPMHGRMGGR LEPPPQSLGA AASFGASATA 180
KISIDAKLAG AIIGKNGVNS KQICRLTGAK LSIRDHEVDP NLRNIELEGT FDQIKQASAM 240
VRELIVNVGS GSGHSMKSNS SSQSNNFKTK LCENFAKGSC TFGDRCHFAH GSEELRKSVI 300
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