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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10015595m |
Common Name | CICLE_v10015595mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
CO-like |
Protein Properties |
Length: 384aa MW: 43106.3 Da PI: 5.6229 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10015595m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 25.5 | 2.7e-08 | 15 | 54 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
C+ +++k + l+C+ ++ lC C +++H+ H
Ciclev10015595m 15 ALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSAnalslrH 54
57*****************************645555555 PP
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2 | zf-B_box | 18.4 | 4.4e-06 | 57 | 100 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
++C+++ ++++ C + + +lC+dC +H + H+++
Ciclev10015595m 57 SQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNssvssvHERS 100
579*************************9999556788888766 PP
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3 | CCT | 64.7 | 2.8e-22 | 333 | 377 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45
R +a+lRYkeK+k+R + K+irYesRKa+A++R+RvKGrFvk++e
Ciclev10015595m 333 RGNAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKGRFVKASE 377
7789**************************************975 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 384 aa
Download sequence Send
to blast |
MEDSFKLSPG SSMLALCDFC NSKLAVLYCT ADSAKLCLFC DQQIHSANAL SLRHLRSQIC 60 DNCRAEPVSV RCCTENLMLC QDCDWDSHYN SSVSSVHERS SVEGFSGCPS VTELASFFDL 120 MGDDLLNLGS GFGVYEPKML NFEELAVPTQ NCSVFMSGNK YKKEVYEQLV EIGKRDLVRF 180 NGNGAELGPG TTTSICDQYG YTQSLEVENI DEEKLLNPKT AFTSLLAFPN NTDLREHDRC 240 VADGKLMWDW DPSYPAAQFQ NHSNQPFSSH TPTTEESNNT PIIGPPSDYR PHEFETWEST 300 KVVQGMHHSI PHGSETANEA ITQFDKELLA KNRGNAMLRY KEKKKNRSYG KQIRYESRKA 360 RADTRKRVKG RFVKASEISD VEI*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT2G33500.1 | 3e-67 | B-box type zinc finger protein with CCT domain |