PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015362m
Common NameCICLE_v10015364mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CO-like
Protein Properties Length: 421aa    MW: 45470.5 Da    PI: 4.8358
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015362mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.87e-06443538
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     +C+ +++++ + +C+++  +lC +C  + H        H+
  Ciclev10015362m  4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLAnalskrHS 43
                     6**************************9994334555565 PP
2zf-B_box22.81.9e-074689441
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                       C++++++++   C + ++ lC++C   +H g       H++++
  Ciclev10015362m 46 LLCERCNSQPALVRCAEERVSLCQNCDWIGH-GtstsassHKRQT 89
                     57*****************************.5588888888766 PP
3CCT59.11.5e-20361404144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R +a+lRYkeK+ktRkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  Ciclev10015362m 361 RSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAG 404
                      889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.471147IPR000315B-box-type zinc finger
SMARTSM003364.8E-8447IPR000315B-box-type zinc finger
CDDcd000214.06E-7447No hitNo description
PROSITE profilePS501199.0584390IPR000315B-box-type zinc finger
CDDcd000217.98E-54790No hitNo description
SMARTSM003361.34890IPR000315B-box-type zinc finger
PfamPF062032.3E-15361403IPR010402CCT domain
PROSITE profilePS5101715.279361403IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MGYMCDFCGD QRSIVYCRSD AACLCLSCDR NVHLANALSK RHSRTLLCER CNSQPALVRC  60
AEERVSLCQN CDWIGHGTST SASSHKRQTI NCYSGCPSAS ELSSIWSFVL DFPSGGESAC  120
EQELGLMSIT DNSIKNSWGP NEDSISQNAA GGGVEANDVC DADKSNVRVG ATSVPGINST  180
TQNLDQIHGS ANNPPLPKLC CSATKGLAFC EDDDLYEDFN MDEMDLNFEN YEELFGVTLN  240
HSEELLENGG IESLFGTKDM SAADSNCQGA VAAEGSSAGL VNAMQPACSN AASADSIMST  300
KTEPILCFTA KQGHSSLSFS GLTGDSNAGD YQECDASSML LMGEPPWCPP CPETSFTSAS  360
RSKAVLRYKE KKKTRKFDKR VRYASRKARA DVRRRVKGRF VKAGEAYDYD PLTQTETRSY  420
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447848.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_006469416.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_015382901.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_024951289.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-156COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLV4U5670.0V4U567_9ROSI; Uncharacterized protein
STRINGXP_006469416.10.0(Citrus sinensis)
STRINGXP_006447847.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-132CONSTANS-like 9