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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Ciclev10013897m |
| Common Name | CICLE_v10013897mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
C3H |
| Protein Properties |
Length: 302aa MW: 34628.9 Da PI: 6.7771 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10013897m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 47.3 | 3.2e-15 | 227 | 252 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+ktelC+ +++tG C+yGd C+FaH+
Ciclev10013897m 227 WKTELCNKWQETGSCPYGDYCQFAHD 252
8************************7 PP
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| 2 | zf-CCCH | 24.2 | 5.9e-08 | 265 | 290 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykte Cr + +GtC+yG rC+F H+
Ciclev10013897m 265 YKTEVCRMVLSGGTCPYGHRCHFRHS 290
9**********************998 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 5.2E-18 | 221 | 259 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.77E-11 | 223 | 258 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.2E-8 | 226 | 253 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.99 | 226 | 254 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.6E-12 | 227 | 252 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.27E-9 | 260 | 295 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.0E-14 | 260 | 293 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.6E-6 | 264 | 291 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.361 | 264 | 292 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.4E-6 | 265 | 290 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0051511 | Biological Process | negative regulation of unidimensional cell growth |
| GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis |
| GO:0003729 | Molecular Function | mRNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MEKEIRDESS PSDAKTSMTT ATATTSSSLT SDFDFDFDFD FDFDVDFSSM YNSVFPPRSS 60
LSPSLITDDR HRIATEHRLQ QARLILEYQQ LCDHYDLCFS RLQAITRELE TLRQQNADLR 120
LANARLLKII TGSFHRMTED IPPAFAPNNV MEPNRLEKRI VLERESFPKS ISVRSSGCTI 180
KPKQANASSG TSRPRAQRVY VPPGDNKREE AEEAKAVELE VYNQGMWKTE LCNKWQETGS 240
CPYGDYCQFA HDFTELRPVI RHPKYKTEVC RMVLSGGTCP YGHRCHFRHS LTEQERIPVP 300
R*
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